Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc56g00019 ATGACGTCACGTAGCAGCGGCAGCGGCGGCGGTGGCGGTGGCGGCAGCCGTAGTAACGGGATGCGGGTGGGCAAATACGAGATGGGTCGGACACTTGGAGAGGGAAACTTCGCAAAGGTGAAGTTCGCGAGGAACGTGGAGACAGGGGAGAACGTGGCCATCAAGATCCTTGACAAAGAAAAAGTTCTTAAGCACAAGATGATAAGCCAGATAAAACGAGAAATATCAACAATGAAACTGGTTAGACACCCCAATATCATACGTTTGCATGAGGTGATGGCTAGCAAGACAAAGATATACATTGTGTTGGAACTTGTGACCGGCGGTGAACTGTTTGATAAAATTGCAAGCCAAGGGAGGCTGAAAGAAGACGAAGCAAGAAAATATTTTCAGCAGCTTATATGTGCTGTGGATTACTGTCACAGTAGAGGTGTTTGCCACAGAGACTTGAAGCCTGAGAATTTGTTGCTGGGTGCTGACGGAGGGCTTAAAGTGTCAGATTTTGGATTGAGTGCACTGCCTCAACAAGTTCGAGAAGATGGGCTGCTTCACACAACATGTGGTACGCCAAATTATGTTGCTCCAGAGGTGATAAAAAATAAAGGCTATGATGGCGCAAAGGCTGATCTCTGGTCATGTGGTGTTATTCTCTTTGTTTTGATGGCTGGTTATTTGCCCTTTGAAGACAACAATCTTATGAATTTATATAAAAAGATTTTCAATGCTCAGTACGAATGTCCTCCATGGTTTTCTTCAAGTGCAAAAAAACTAATCAAGAAAATCCTCGATCCCAATCCTGCTACGCGGATTACAATTCCTGAGTTAATTGAGAATGAATGGTTCAAGAAGGGGTATAAACCTCCTCGATTCGAACAGGAAGATGTCAGTCTTGATGATATAAATGCTATTTTCAGTGAAGCAACGGATTCACACAATCTTGTTGTGGAAAGGCGAGAAGAGGAGCCAGTGGCACCTGTGACTATGAATGCATTTGAGCTTATCTCTACATCTCAGGGCCTCAATCTCAGAAATCTTTTCCAGAAGCAGATGGGACTTGTTAAAAGGGAAACAAGATTCACATCCAAGTGTTCGGCAAATGAGATAATCTCAAAAATTGAGGAGGCTGCAGTTCCTCTGGGTTTTGATGTTAAGAAGAACAACACTAAGTTGAAGATTCAAGGGGAAAAAAGCGGACGAAAAGGTCATCTCGCAGTATCAACTGAGATCTTGGAGGTGGCCCCTCAACTTAACATGGTCGAGCTTCGAAAATGCGGAGGAGACACTTTGGAATTTCACAAGTTCTACAAGAATCTATCTGTTGGGCTGAAAGACATCATTTGGAAAGCAGAACCTATTGATGAAGAATCGAATGATACAGATACACATACACATACAGGTACAGAAAAAGGTGGCGGTAGTAATTCCAAATAA 1431 0.4326 MTSRSSGSGGGGGGGSRSNGMRVGKYEMGRTLGEGNFAKVKFARNVETGENVAIKILDKEKVLKHKMISQIKREISTMKLVRHPNIIRLHEVMASKTKIYIVLELVTGGELFDKIASQGRLKEDEARKYFQQLICAVDYCHSRGVCHRDLKPENLLLGADGGLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVIKNKGYDGAKADLWSCGVILFVLMAGYLPFEDNNLMNLYKKIFNAQYECPPWFSSSAKKLIKKILDPNPATRITIPELIENEWFKKGYKPPRFEQEDVSLDDINAIFSEATDSHNLVVERREEEPVAPVTMNAFELISTSQGLNLRNLFQKQMGLVKRETRFTSKCSANEIISKIEEAAVPLGFDVKKNNTKLKIQGEKSGRKGHLAVSTEILEVAPQLNMVELRKCGGDTLEFHKFYKNLSVGLKDIIWKAEPIDEESNDTDTHTHTGTEKGGGSNSK 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc56g00019 476 CDD CIPK_C 329 444 - -
Stsc56g00019 476 SUPERFAMILY Protein kinase-like (PK-like) 23 312 IPR011009 -
Stsc56g00019 476 Gene3D Kinase associated domain 1, KA1 323 448 - -
Stsc56g00019 476 MobiDBLite consensus disorder prediction 1 23 - -
Stsc56g00019 476 ProSitePatterns Protein kinases ATP-binding region signature. 32 55 IPR017441 GO:0005524
Stsc56g00019 476 CDD STKc_SnRK3 25 280 - -
Stsc56g00019 476 Gene3D Phosphorylase Kinase; domain 1 15 105 - -
Stsc56g00019 476 SMART serkin_6 26 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc56g00019 476 FunFam Non-specific serine/threonine protein kinase 19 322 - -
Stsc56g00019 476 Pfam Protein kinase domain 26 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc56g00019 476 FunFam Non-specific serine/threonine protein kinase 322 448 - -
Stsc56g00019 476 FunFam Non-specific serine/threonine protein kinase 17 105 - -
Stsc56g00019 476 ProSiteProfiles NAF domain profile. 323 347 IPR018451 GO:0007165
Stsc56g00019 476 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Stsc56g00019 476 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 22 433 - -
Stsc56g00019 476 Gene3D Transferase(Phosphotransferase) domain 1 106 288 - -
Stsc56g00019 476 ProSiteProfiles Protein kinase domain profile. 26 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc56g00019 476 Pfam NAF domain 325 385 IPR004041 GO:0007165
Stsc56g00019 476 MobiDBLite consensus disorder prediction 453 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc56g00019 Stsc-Chr56 137321 142076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc56g00019 6 455 CBL-interacting serine-threonine protein kinases AT1G01140 67.982 0.0 649
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Stsc56g00019 Pkinase 9.8e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc56g00019 - - ahf:112734784 854.744