Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc56g00018 ATGGGGGAACAAAAGAAACGCAGCATTCCGGTGCTGCCATGGATGCGAGACCCTCTAGACCTTACTCTCTTCCAACAACTTCCCCTCCACACCCTTCCTTCCCTCCACCCTAAGTTGAAATTGTCACTAGAAAACATGGGGATTTCGAACCTGTTCCCGGTTCAAGTTGCGGTCTGGCAAGAAACCGTTGGGCCTGGGAAATTCCAGCGAGACCTTTGCGTTAACTCCCCCACCGGAAGTGGCAAGACCTTGGCCTATGCACTCCCCATCGTACAGTTGCTCTCCACACGCGTTGTCACGTGCCTACGCGCATTGGTTGTTGTCCCCACGCGTGACCTCGCCTTCCAGGTCAAGCGTGTCTTCGACGTCATTGCCTCGCCTCTCGGCCTGCGTGTGGGACTTGTTGCTGGTCAGTCTTCCTTTGTGGAGGAGATTTCAGAGCTGGTGTGCGCGCCGGATTGCGAGTTAGGAATTTCTTATGATCCGGAAGAGGTTTCATTTCGTGTTCGGAGACAGTTGAGGAGTAAGGTGGATATATTGGTGGCAACCCCTGGAAGATTGATGGATCATATCAATACCACCAAAGGTTTCACCCTTGAGCACCTTCAATATCTTGTGGTTGATGAAACGGATCGGCTACTCCGTGAGGCCTACCAGTCATGGCTACCTGCTGTCCTTGAATTGGTGCAGTCAAATGATGATAACAATTTTGAACCAAGTGATTCGTTTTTACCTATAGGTGCGTTAACAACTAGAAGAAGATGTGGGGTTGAGAGGGGTTTCAAGGATAAGCCCTACCCTAGGCTAGCAAAGATTGTCCTCTCTGCAACAATAACTCAGGACCCAGGCAGGCTTGTTCAGCTTGAGTTGCATCACCCTTTATTCCTGAGAGCTGGGCCAATGCGTTATCGACTTCCAGAAAATCTGGAATCCTACAAATTGACCTGTGAAAGAAAGGTCAAACCCTTGTATTTGGTTGCCCTTTTAAAATCACTAGATGGAGAAAAATGCATAATTTTTACAAAATCTGTGGAGTCTACCCATCGTCTCTGCAAATTGCTTAATTGTTTTGGAGATCTGCAAATTGATATGAAGGAGTATTCCGGTCTTCAACATCAACGTGTAAGAAGTAAGACACTGAATGATTTTCGGAATGGCANNNNNNNNNNAATGGATGTTGAAGGGGTACGAAATGTCATTAACTATGACATGCCCAAATACGTGAAGACCTATGTTCATCGGGCTGGTAGGACTGCCCGAGCTGGCCAGACTGGGTGTTGCTTCACATTGATGTCTAATGACGAGGTTCGACAATTTAAGAAGTTGATGCAAAAGGCCGAGGCTAGTTCTTGTCCTGAACACATTATCCAATCCAATTTGATAGAAGCACTTCATCCTAACTATGAATCAGCATTGAAAAAATTCAAGGAGAAGATTTCGAAGGCAGGAAAGAAACCAAATGATTAG 1467 0.4628 MGEQKKRSIPVLPWMRDPLDLTLFQQLPLHTLPSLHPKLKLSLENMGISNLFPVQVAVWQETVGPGKFQRDLCVNSPTGSGKTLAYALPIVQLLSTRVVTCLRALVVVPTRDLAFQVKRVFDVIASPLGLRVGLVAGQSSFVEEISELVCAPDCELGISYDPEEVSFRVRRQLRSKVDILVATPGRLMDHINTTKGFTLEHLQYLVVDETDRLLREAYQSWLPAVLELVQSNDDNNFEPSDSFLPIGALTTRRRCGVERGFKDKPYPRLAKIVLSATITQDPGRLVQLELHHPLFLRAGPMRYRLPENLESYKLTCERKVKPLYLVALLKSLDGEKCIIFTKSVESTHRLCKLLNCFGDLQIDMKEYSGLQHQRVRSKTLNDFRNGXXXXMDVEGVRNVINYDMPKYVKTYVHRAGRTARAGQTGCCFTLMSNDEVRQFKKLMQKAEASSCPEHIIQSNLIEALHPNYESALKKFKEKISKAGKKPND 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc56g00018 488 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 324 472 IPR001650 -
Stsc56g00018 488 Pfam Helicase conserved C-terminal domain 321 422 IPR001650 -
Stsc56g00018 488 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 63 296 IPR014001 -
Stsc56g00018 488 PANTHER RNA HELICASE 35 460 - -
Stsc56g00018 488 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 440 IPR027417 -
Stsc56g00018 488 Gene3D - 16 299 IPR027417 -
Stsc56g00018 488 CDD SF2_C_DEAD 310 430 - -
Stsc56g00018 488 SMART helicmild6 348 422 IPR001650 -
Stsc56g00018 488 Gene3D - 308 488 IPR027417 -
Stsc56g00018 488 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 305 455 IPR027417 -
Stsc56g00018 488 CDD DEADc_DDX51 43 296 - -
Stsc56g00018 488 Pfam DEAD/DEAH box helicase 53 282 IPR011545 GO:0003676|GO:0005524
Stsc56g00018 488 SMART ultradead3 47 312 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc56g00018 Stsc-Chr56 128315 132849 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc56g00018 57 437 Eukaryotic Initiation Factors Gene Family AT3G13920 22.055 3.33e-18 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc56g00018 K14807 - qsa:O6P43_013012 661.373