Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc56g00012 ATGGAGGAGGAGGATGAGATCCAAGCACAGGCGTGTAAGTTACCAAGGCTCGCTAATGGCAGGACCGACCCCACCACCACCAACAACAACAACAACAACAAGATAGCAGCTTCCAGCAGAGATGGCAGTAGCAGTAGGCTCCATGGATGGCACCATTCCTCCAGGATCATCAGGGTTTCTAGAGCTTCCGGCGGCAAGGATCGCCACAGCAAGGTCATGACCTCTAAGGGCCTCCGAGACAGAAGGGTCAGGCTCTCCGTCACCACCGCCATTCAGTTTTACGACCTCCAAGACCGATTGGGCTATGACCAGCCAAGCAAGGCCGTGGAGTGGCTCATCAAGTCTGCTCAAGACGCCATTGCTGAGCTTCCTTCCTTGAACAACACCTTCCCTGATGAAACCCCCATAGACAACCAGAATCAGAACCTCTCACTCTCGAAATCCGCTTGCAGCAGCACTTCAGAGACGAGCAAGGGGTCTGGGTTGTCCCTTTCCCGGACCGATATCCGAGTGAAAGCGAGGGAGAGGGCGAGGGAGAGAGCAGCGAAGGAGAAGAAGAAAGAAAACAATGAGAATAGCGTTGTTCATGAGCATCAGCATCAGAACATAAACCCAGTTTCTCCTTCGTTTACTGAGCTACTTACAGGTGGGATAACAAGTGCGGTTCCAACAACAACAGCAGCAGCTAATAGTCCCACTTCACATGAGCCTGATGCTGCTCTCTTCCACAAAGCAGCAGCAGCAAGACAACAATGGGCTTCAGCTCCCATGGATTACTTCACCCAGGTTCTCGCTGCTCCCTCTTCCTCTTCAAGAACCCACCAACACCAACACCAACACCAGATCCAACTGGGACATCATAACGTAGCTGAACCCATATCCTTCAACAACAACAATGATCATCACAACCACCACTTGCAACAGCAACAGCAGCACTACTCGTTTATTCCGGATCAGTTCATGCCGTCTCACTCTCATAACCATCATCAGAGTGGTGGCGACAGTGATTACAACCTCAACTTCACGATATCTCCGGCTTCTGCGTCATCTGGCCTTGCTGCCTACAACAACAATAGGGGGACCCTTCAGTCCAATTCTCCGTCACATTTCTTGCCTCACCTCCAGAGGTTCTCGCTCCCTATGGACGGATCCACTGTTCCTCTCTTCATTGGAGCTGCTTCTGCTGCTCCTCCGCCTCCCATGGACGACCACCACCATCAGTTCTCATCACCCGCATTTGATGCCCGCTTGCACCTCTACTACGCCGATGGAACCCGCCATCCCGACCACAAGGGCAAATCCAAGAACTGA 1311 0.5233 MEEEDEIQAQACKLPRLANGRTDPTTTNNNNNNKIAASSRDGSSSRLHGWHHSSRIIRVSRASGGKDRHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKSAQDAIAELPSLNNTFPDETPIDNQNQNLSLSKSACSSTSETSKGSGLSLSRTDIRVKARERARERAAKEKKKENNENSVVHEHQHQNINPVSPSFTELLTGGITSAVPTTTAAANSPTSHEPDAALFHKAAAARQQWASAPMDYFTQVLAAPSSSSRTHQHQHQHQIQLGHHNVAEPISFNNNNDHHNHHLQQQQQHYSFIPDQFMPSHSHNHHQSGGDSDYNLNFTISPASASSGLAAYNNNRGTLQSNSPSHFLPHLQRFSLPMDGSTVPLFIGAASAAPPPPMDDHHHQFSSPAFDARLHLYYADGTRHPDHKGKSKN 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc56g00012 436 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 27 344 IPR005333 GO:0003700
Stsc56g00012 436 MobiDBLite consensus disorder prediction 130 198 - -
Stsc56g00012 436 MobiDBLite consensus disorder prediction 20 44 - -
Stsc56g00012 436 MobiDBLite consensus disorder prediction 1 54 - -
Stsc56g00012 436 Pfam TCP family transcription factor 64 196 IPR017887 -
Stsc56g00012 436 ProSiteProfiles TCP domain profile. 65 123 IPR017887 -
Stsc56g00012 436 ProSiteProfiles R domain profile. 167 185 IPR017888 -
Stsc56g00012 436 MobiDBLite consensus disorder prediction 168 195 - -
Stsc56g00012 436 Coils Coil 171 191 - -
Stsc56g00012 436 MobiDBLite consensus disorder prediction 130 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc56g00012 Stsc-Chr56 62244 67405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc56g00012 46 436 TCP Transcription Factor Family AT4G18390 45.564 6.36e-80 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Stsc56g00012 TCP 3.6e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc56g00012 - - lang:109362619 358.607