Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc56g00002 ATGAGGAGGAACTGCAACTTAGAACTACGGCTATTCCCTTCTCCCGCCTCCGACCACCGATCCATGATGGAAGAAGAAGAAGAAGAAGCAGCGAGTGAAAGTAGGAGTATTAGCCCATTATTATTACAAGAAGGACAGCAATCATCATCACAGCCGCTCACCATATTCTACGATGGCAAGATTTCGGTTTGCGAGGTGACTCAGTCTCAGGCAAGATCCATCTTAATGCTTGCAAGAAGGGAATTGGAAGAGAGAGTGAGGACACCAACATCAACTTCAACTACTGGCTCAACTTCACCAGCGTTACTTCAATCGTCATCATCACAACAACATAATAATAATCTGCATAGCCCTGCTGGGACTAGTAGTCTTTCCATGAAAAGATCCCTTCAGAGGTTTCTTCAAAAGAGAAAGAACCGCCTTCAAGAAACATCCCCCTACCATCACTAG 450 0.4489 MRRNCNLELRLFPSPASDHRSMMEEEEEEAASESRSISPLLLQEGQQSSSQPLTIFYDGKISVCEVTQSQARSILMLARRELEERVRTPTSTSTTGSTSPALLQSSSSQQHNNNLHSPAGTSSLSMKRSLQRFLQKRKNRLQETSPYHH 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc56g00002 149 ProSiteProfiles Tify domain profile. 46 80 IPR010399 -
Stsc56g00002 149 Pfam tify domain 48 78 IPR010399 -
Stsc56g00002 149 Pfam Jas motif 127 147 IPR018467 -
Stsc56g00002 149 MobiDBLite consensus disorder prediction 80 129 - -
Stsc56g00002 149 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 29 147 IPR040390 -
Stsc56g00002 149 SMART tify_2 46 80 IPR010399 -
Stsc56g00002 149 MobiDBLite consensus disorder prediction 14 49 - -
Stsc56g00002 149 MobiDBLite consensus disorder prediction 88 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc56g00002 Stsc-Chr56 19766 20565 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc56g00002 1 148 Tify Gene Family AT1G30135 41.176 3.72e-23 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Stsc56g00002 tify 6.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc56g00002 - - qsa:O6P43_032137 129.798