Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc567g00003 ATGCGGTTTAGATTCTATGAAAGCGCATCGGCAAGAAAAAGGACTGTGGCGGCAGAAGAAAGAGAAAGGGCCGTCAACGCATCTAAGGCATTCGAACCACTTAATCCTTTCTGCCGTGTTGTCCTGCGGCCATCATACTTGTATAGGGGATGCATAATGTATTTGCCATCTTGCTTTGCGGAAAAGCATTTGAACGAGGTTTCGGGATTCATCAAACTTCAGCTCTCCGACGGAAGACAGTGGCCTGTTCGCTGCCTCTATAGAGGAGGTCGAGCTAAGCTGAGCCAGGGATGGTTTGAATTTGCGATAGAGAACAATCTTGGCGAGGGAGATGTCTGTGTGTTTGAGCTCCTTCCGACGAAGGAGGTGATAATGCAAGTTACATTGTTTCGCGTCACTGAGAATGACGGATTCTTCAGCCCTCCTCCTGTGCAACAGCCGAGCCAAAATCTCGTCAGCCAATCTAAAATGTTGAATGCGCACATGCGGCCCAGCTCTGGTAAACTGATCAGGAACTAA 519 0.4855 MRFRFYESASARKRTVAAEERERAVNASKAFEPLNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNEVSGFIKLQLSDGRQWPVRCLYRGGRAKLSQGWFEFAIENNLGEGDVCVFELLPTKEVIMQVTLFRVTENDGFFSPPPVQQPSQNLVSQSKMLNAHMRPSSGKLIRN 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc567g00003 172 Gene3D - 15 135 IPR015300 -
Stsc567g00003 172 Pfam B3 DNA binding domain 41 131 IPR003340 GO:0003677
Stsc567g00003 172 SMART B3_2 38 133 IPR003340 GO:0003677
Stsc567g00003 172 CDD B3_DNA 36 131 IPR003340 GO:0003677
Stsc567g00003 172 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 18 136 IPR044837 -
Stsc567g00003 172 SUPERFAMILY DNA-binding pseudobarrel domain 32 132 IPR015300 -
Stsc567g00003 172 ProSiteProfiles B3 DNA-binding domain profile. 38 133 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc567g00003 Stsc-Chr567 7419 8664 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc567g00003 2 134 REM Transcription Factor Family AT1G49480 75.188 7.42e-73 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc567g00003 B3 9e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc567g00003 - - adu:107476734 305.449