Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc567g00002 ATGCCGCGCCCTTCTTTCCACAAGCTTGTTCTTCCTTCCACCATTCAATCTAGGCAATTGAGGATTCCAGATTCTTTTCTGAGTAGATATGGAGCTGACCTTTCTCCGATAGCTACCTTCTCGGTTCCTGATGGCAGCATTTGGCGTGTCAGATTTAAAAAGTTGGACAATGGATTTTGGTTTGTTGATGGTTGGCCAGAATTTGTTCAACGTTACTCCATCGGCGTTGGATACTTCTTAGTATTCAAATATGAAGGAAAGTCAAACTTCATTGTTCGTATATTTAATTTGGCCACTTCCGAGATAAGCTATCAGTCGCCCGTACGAAGCAGTAACGAAGGGGCTTACTTTGCAAACCGTCTTAAGATTTTTGAAGAATTGGAAGATGAAGACTTCGCTGAATATTCATCACCTTCCAGCCTTACTCCTGGTGCATTCNNNNNNNNNNATACTCCTCCACCATTGCAGAATCTATTTAATGGGTCTAAACTTAATAGCGTAAACTGGGGCGATAGTACAAACCCCCTTTCTTCAAGAAGTGCCAATTCGCTAGATGGCCGGTCGACCAGAGATATAGGTGTTCAGTTTAATGCAGTTGAGTTTAAAAGGTCTACCGATGAATTGAAGATACGCACTTCTGGGACTGGAAGTTCTGTTGAGGAAAGGGAGAAGAAAACTCCAAGAAAGAAGCGAAAATCAGATGGCCAGGAACTCGTTGTGTATCAAGAAGATGAGGCAGAGATGCGGTTTAGATTCTATGAAAGCGCATCGGCAAGAAAAAGGACTGTGGCGGCAGAAGAAAGAGAAAGGGCCGTCAACGCATCTAAGGCATTCGAACCACTTAATCCTTTCTGCCGTGTTGTCCTGCGGCCATCATACTTGTATAGGGGATGCATAATGTATTTGCCATCTTGCTTTGCGGAAAAGCATTTGAACGAGGTTTCGGGATTCATCAAACTTCAGCTCTCCGACGGAAGACAGTGGCCTGTTCGCTGCCTCTATAGAGGAGGTCGAGCTAAGCTGAGCCAGGGATGGTTTGAATTTGCGATAGAGAACAATCTTGGCGAGGGAGATGTCTGTGTGTTTGAGCTCCTTCCGACGAAGGAGGTGATAATGCAAGTTACATTGTTTCGCGTCACTGAGAATGACGGATTCTTCAGCCCTCCTCCTGTGCAACAGCCGAGCCAAAATCTCGTCAGCCAATCTAAAATGTTGAATGCGCACATGCGGCCCAGCTCTGGTAAACTGATCAGGAACTAA 1260 0.4484 MPRPSFHKLVLPSTIQSRQLRIPDSFLSRYGADLSPIATFSVPDGSIWRVRFKKLDNGFWFVDGWPEFVQRYSIGVGYFLVFKYEGKSNFIVRIFNLATSEISYQSPVRSSNEGAYFANRLKIFEELEDEDFAEYSSPSSLTPGAFXXXXTPPPLQNLFNGSKLNSVNWGDSTNPLSSRSANSLDGRSTRDIGVQFNAVEFKRSTDELKIRTSGTGSSVEEREKKTPRKKRKSDGQELVVYQEDEAEMRFRFYESASARKRTVAAEERERAVNASKAFEPLNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNEVSGFIKLQLSDGRQWPVRCLYRGGRAKLSQGWFEFAIENNLGEGDVCVFELLPTKEVIMQVTLFRVTENDGFFSPPPVQQPSQNLVSQSKMLNAHMRPSSGKLIRN 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc567g00002 419 SUPERFAMILY DNA-binding pseudobarrel domain 279 379 IPR015300 -
Stsc567g00002 419 Pfam B3 DNA binding domain 9 96 IPR003340 GO:0003677
Stsc567g00002 419 Pfam B3 DNA binding domain 288 378 IPR003340 GO:0003677
Stsc567g00002 419 SMART B3_2 285 380 IPR003340 GO:0003677
Stsc567g00002 419 SMART B3_2 6 98 IPR003340 GO:0003677
Stsc567g00002 419 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Stsc567g00002 419 Gene3D - 1 98 IPR015300 -
Stsc567g00002 419 SUPERFAMILY DNA-binding pseudobarrel domain 3 96 IPR015300 -
Stsc567g00002 419 CDD B3_DNA 4 96 IPR003340 GO:0003677
Stsc567g00002 419 MobiDBLite consensus disorder prediction 216 235 - -
Stsc567g00002 419 CDD B3_DNA 283 378 IPR003340 GO:0003677
Stsc567g00002 419 MobiDBLite consensus disorder prediction 210 235 - -
Stsc567g00002 419 ProSiteProfiles B3 DNA-binding domain profile. 285 380 IPR003340 GO:0003677
Stsc567g00002 419 MobiDBLite consensus disorder prediction 143 162 - -
Stsc567g00002 419 PANTHER B3 DOMAIN-CONTAINING 3 369 - -
Stsc567g00002 419 Gene3D - 262 382 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc567g00002 Stsc-Chr567 7419 10604 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc567g00002 1 381 B3 DNA Binding Superfamily AT3G18990 50.260 3.49e-122 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc567g00002 B3 5.9e-16 CL0405