Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc567g00001 ATGGAAGATGAGGACTTCAATGAAACCAAGCCAGCCTTGCAGAATCTATTTAACGGATCAAAGCTTAATAATGTAAACTGGGGAGAGGGTGGGAATGCACCTCCGGCGAAAAGTGCCAGAGATATAGGTCTTCAGTTTAATCCACTTGAGTTTAAAAAATCCACCGATGAATTAAAATTGCGTGCTTCTTTTGAGGAAAAGGCCAAAAAATCTGCAAGAAAGAGGCGTAAATCAGAACCTGAAGGCCAGGAAGCCTCTGAAGAGCAAGAGGAGGAGAGGGAAATGCGCATTCGATTCTATGAAAGTGCTTCTGCAAGGAAAAGAACCGTGACAGCTGAGGAAAGAGAAAAGGCTGTCAATGAAGCGAAAGCATTTGAACCACCCAACCCTTTCTGCCGGGTTGTTCTGCGGCCCTCCTATCTGTATAGGGGATGCATAATGTACTTACCATCTTGCTTCGCGGAAAAGTATTTGAATGGTGTTTCGGGATTCATCAAACTTCAACACCCTGATGGGAGACAGTGGCCGGTTCGCTGCCTTTATCGCACAGGTAGAGCTAAATTAAGCCAGGGATGGTTTGAATTCGCGATAGACAACAATCTAGGAGAAGGCGACGTCTGCGTGTTTGAGCTGCTTAAAGGATCAAAGGAAGTAGTGCTGCAAGTTACTATATTTCGCGTCACCGACGAGGCGGAGTTCTTGAGCCCGACATTGCTGCAGAACCAAAACGAGGCCAAGCTGTTGACCAGTCCCATGCACAACCTCACTCCAACTAAACCAGTTAGGAATTAG 792 0.4621 MEDEDFNETKPALQNLFNGSKLNNVNWGEGGNAPPAKSARDIGLQFNPLEFKKSTDELKLRASFEEKAKKSARKRRKSEPEGQEASEEQEEEREMRIRFYESASARKRTVTAEEREKAVNEAKAFEPPNPFCRVVLRPSYLYRGCIMYLPSCFAEKYLNGVSGFIKLQHPDGRQWPVRCLYRTGRAKLSQGWFEFAIDNNLGEGDVCVFELLKGSKEVVLQVTIFRVTDEAEFLSPTLLQNQNEAKLLTSPMHNLTPTKPVRN 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc567g00001 263 SMART B3_2 132 228 IPR003340 GO:0003677
Stsc567g00001 263 Pfam B3 DNA binding domain 135 226 IPR003340 GO:0003677
Stsc567g00001 263 ProSiteProfiles B3 DNA-binding domain profile. 132 228 IPR003340 GO:0003677
Stsc567g00001 263 MobiDBLite consensus disorder prediction 11 27 - -
Stsc567g00001 263 Gene3D - 109 230 IPR015300 -
Stsc567g00001 263 MobiDBLite consensus disorder prediction 75 94 - -
Stsc567g00001 263 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 66 230 IPR044837 -
Stsc567g00001 263 MobiDBLite consensus disorder prediction 62 94 - -
Stsc567g00001 263 MobiDBLite consensus disorder prediction 1 41 - -
Stsc567g00001 263 SUPERFAMILY DNA-binding pseudobarrel domain 125 227 IPR015300 -
Stsc567g00001 263 CDD B3_DNA 130 226 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc567g00001 Stsc-Chr567 1480 2881 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc567g00001 69 232 B3 DNA Binding Superfamily AT3G18990 67.073 2.46e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc567g00001 B3 1.7e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc567g00001 - - gmx:100813285 360.147