Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc563g00001 ATGTTGAGAGATTTCTATAACCTTCCTATAGGAGGAAGATATGTACGGTGTGAACCTGGCAGAAAGGATGTGGATAGTGTGGTGATAAGTGGGTTTGACAAGGAGCTCTCGGAAGCAGAAATTCTAGATGTAGTAAGAACTGCTACTAGTGTAAGGATTTCAAGCTTTTTCTTGATTAAAGGAGATGCTGTTGGGAATCCACCTGTCCGATCCTGTGAAGAGGCGCTTCTGAAAGAAATTTCCCCCTTCATGCCCAAGAAAGATCCCCACATCAATTCTTGTCGGGTTCAAGTCTTCCAACCTGAGCCCAAGGATGCATACATGAGAGCTTCAATCACCTTTGATGGAAGACTACATTTAGAGGCAGCCAAAGCTTTAGAGCAAATTGAGGGGAAGGTGTTGCCAGGATGCCTTTCATGGCAGAAGATAAATTGTCAGCGTGTTTTCCATAGCTCCTTGATAGTTCCTCTCCCAGTGTATCGTGTTATCAAGGAAGAATTGGAGACAATACTTGAAAGCTTCAGTAATTTCAAAGGTCTTGAATGTAGACTAGAAAGGACTTCCAATGGTTCCCAGAGATTGAAAATTACTGCAAATGCCACAAAGACAGTAGCAGAAGTTCGGAGACCGTTTGAAGAATTATCAAGGGGGAAAAGCGTCGAGCATGCCAGCCTCACCCCTGCAGTTGTGCAACTCCTGCTTTCAAGAGAGGGCTTTAATCTCAAGAACTCATTGCAACAGGAGACAGGAACTTACATTCTTTTTGACAGGTACAACATGAGTGTACGTGTGTTTGGTCCTCCTGACAAGATTCCCCTGGCTCAGCAGAAACTGGTTCAATCCCTACTTTCTTTCCATGAGGCAAAGCATTTGGAAATTCATTTGAGGGGCCGGGATCTACCCCCTGACTTAATGAAGCAAGTGGTAAAGCAATTTGGGCCAGATCTTAGTGGACTGAAAGAGAAGGTACCTGGGGCAGATCTCGTACTAAACATACGCCGCCAGATAATCTATCTACGTGGCAACAAGGATCTGAAACAAAAAGTAGAGAAGTTCATTTTTGATATTGCCTGTTCTAGTCGTGGTGCTGTTGAGAGATTGGGCACTGGACATAGTTGCCCAATTTGCTTATGTGAGGTTGAGGATGGATATCAGCTTGACGGTTGTTGTCATTTATTCTGCCGTTCATGCCTGGTGGATCAATGCGAATCTGCTATAAGAAACCAAGGTACTTTCCCAATATGTTGTGCCCACGAGGGTTGTGGAGAACCCATTCTGCTCACAGATTTGAAGGGTCTCTTACTGGGGGACAAGTTGGAGGAACTTTTCAGGGCTTCTTTGGGATCTTTTGTGGCCTCCAGTGGGGGAACATACCGATTTTGTCCATCTCCTGACTGCCCCTCGGTTTATCGAGTTGCAGACCCGGGGACAGCCGGTGAGCCATTTGTATGCGGGGCATGTTATTCAGAAACTTGTACCAGGTGCCACTTGGAGTATCATCCATACATTTCGTGCAATCAGTATCGGGAATTCAAGGAAGACCCCGACTCATCGCTGAAGGCATGGTGCAGCGGTAAAGAACATGTTAAGGCGTGTCCATCTTGTGGGTATACAATTGAGAAAATAGATGGTTGCAACCATATTGAGTGCAAGTGTGGGAAGCATGTGTGCTGGGTTTGCTTGGAGTTCTTTGGAAGTAGTGATAATTGCTATGACCATTTGAGAAATATACACATGGCCATCATTTGA 1749 0.4511 MLRDFYNLPIGGRYVRCEPGRKDVDSVVISGFDKELSEAEILDVVRTATSVRISSFFLIKGDAVGNPPVRSCEEALLKEISPFMPKKDPHINSCRVQVFQPEPKDAYMRASITFDGRLHLEAAKALEQIEGKVLPGCLSWQKINCQRVFHSSLIVPLPVYRVIKEELETILESFSNFKGLECRLERTSNGSQRLKITANATKTVAEVRRPFEELSRGKSVEHASLTPAVVQLLLSREGFNLKNSLQQETGTYILFDRYNMSVRVFGPPDKIPLAQQKLVQSLLSFHEAKHLEIHLRGRDLPPDLMKQVVKQFGPDLSGLKEKVPGADLVLNIRRQIIYLRGNKDLKQKVEKFIFDIACSSRGAVERLGTGHSCPICLCEVEDGYQLDGCCHLFCRSCLVDQCESAIRNQGTFPICCAHEGCGEPILLTDLKGLLLGDKLEELFRASLGSFVASSGGTYRFCPSPDCPSVYRVADPGTAGEPFVCGACYSETCTRCHLEYHPYISCNQYREFKEDPDSSLKAWCSGKEHVKACPSCGYTIEKIDGCNHIECKCGKHVCWVCLEFFGSSDNCYDHLRNIHMAII 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc563g00001 582 Gene3D - 501 580 - -
Stsc563g00001 582 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 501 579 - -
Stsc563g00001 582 ProSiteProfiles TRIAD supradomain profile. 369 582 IPR044066 -
Stsc563g00001 582 ProSitePatterns Zinc finger C2H2 type domain signature. 557 578 IPR013087 -
Stsc563g00001 582 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 369 449 IPR013083 -
Stsc563g00001 582 ProSiteProfiles Zinc finger RING-type profile. 373 415 IPR001841 -
Stsc563g00001 582 SMART ibrneu5 440 505 IPR002867 GO:0008270
Stsc563g00001 582 SMART ibrneu5 506 570 IPR002867 GO:0008270
Stsc563g00001 582 SUPERFAMILY RING/U-box 456 510 - -
Stsc563g00001 582 SUPERFAMILY RING/U-box 527 574 - -
Stsc563g00001 582 PANTHER UBIQUITIN CONJUGATING ENZYME 7 INTERACTING PROTEIN-RELATED 364 568 - -
Stsc563g00001 582 Pfam IBR domain, a half RING-finger domain 447 505 IPR002867 GO:0008270
Stsc563g00001 582 SUPERFAMILY RING/U-box 371 431 - -
Stsc563g00001 582 CDD Rcat_RBR_DEAH12-like 529 578 - -
Stsc563g00001 582 CDD BRcat_RBR 457 508 - -
Stsc563g00001 582 ProSitePatterns Zinc finger RING-type signature. 389 398 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc563g00001 Stsc-Chr563 26747 30819 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc563g00001 389 565 ARIADNE family AT3G27710 30.220 2.03e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc563g00001 K12818 - gmx:100810008 940.643