Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc562g00002 ATGACTAGAAATAAGTCAAGCCCTGGATATATAAAAAACAACTCTAGGAGAAGGACAATTTTTAGGGCAAGAAAGAGTAGCTTGATAAAAAAGGTTGATGAGATTAGCACCCTTTGTGGGATTGAATCTTGTGCTATCATTTACCCTGAGAATGAACTTGAGCCAGAGGTTTGGCCATCACCAGAGAAGGCCAAAGAAGTCATTTCTAAGTTCAAGGAAAAGCCCATATTGGAACAAAACAAGAGAATGCTAACTCAAGAAACCTTGTTGAAGAAAAGAATCCAAAAGGCTGAAGACCAACTAAAGAAACAGAGGGATGAGAATATGCAGAAAGAGATGAGCAATCTCATGTTCAAATTCTTGAGCACTGGTGGAATCTCTGACAATAATGTTAGCTTGATTGATCTTAGTGATCTCTCAAAGCTAATTGATCAGACTATAAAGAAAATTGATCTAAAGATTAAAAAGACTCGAGACTAA 480 0.3667 MTRNKSSPGYIKNNSRRRTIFRARKSSLIKKVDEISTLCGIESCAIIYPENELEPEVWPSPEKAKEVISKFKEKPILEQNKRMLTQETLLKKRIQKAEDQLKKQRDENMQKEMSNLMFKFLSTGGISDNNVSLIDLSDLSKLIDQTIKKIDLKIKKTRD 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc562g00002 159 CDD MADS_SRF_like 2 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
Stsc562g00002 159 Coils Coil 80 114 - -
Stsc562g00002 159 Gene3D - 13 119 IPR036879 GO:0003677|GO:0046983
Stsc562g00002 159 FunFam Agamous-like MADS-box protein AGL80 13 98 - -
Stsc562g00002 159 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc562g00002 159 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Stsc562g00002 159 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Stsc562g00002 159 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc562g00002 Stsc-Chr562 13665 14144 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc562g00002 1 159 Type I MADS-box Gene Family AT5G48670 42.138 6.45e-37 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Stsc562g00002 SRF-TF 8.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc562g00002 - - aip:107644294 152.91