Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc560g00001 ATGGTATCTATTATTGTCATCATTGGTTTAGAACTTCTTGTGTTCTTATTACCTTTTTCTTGTTCTCTCCCACCACCTAATAATTTGCTTCCAAATCCTTGCAATGAAACATGTGGAAAACTCCAAGTTCCTTTCCCATTCTTTGTCAACTCTTCTTGTTCCTCAATCTCAAATGCCTTCAACCTTTCTTGCTCAAACTCCTCCAACCTTTTCCTCAAAATTGATTCACAAAGTTACAAGGTTTTAGAGTTCTTCAATGATGGCTTGTTGGTAGACTTTCCAGGCACATCGTCCGAGTTGACATGCCGAATGTACAATGACTTGAACTCATTTGGGAAAACTTTTGAAGGAAAAGATCAAGATCACTATGGAATCTCATTTGACAATGTTGTAGGACTCTATGACTGTGATGACTCCTCACTTTGCAAATCAGATTGTGAAACAATAGACCTACCTGGGTGTGATAATGGAAGTGGTGGTGGATCCCTTGGATGCTGTTATCCACTGAGTGATCATAGCATATGGCACAGTGGAGAAGGATTCTCAGTGTTCTCTGAATTTGGATGCAGAGGGTTCTCTAGTTGGGCTGTTGTTAGAGGGTCAAATTCAGGGAAACATGGAGTGAAGTTGGAATGGGGTGTTCCATTGAAGAAGAATTCATCATCAATGGAGAAAGTTTGTGCTGTGAATGCAGATATGGTGAATGTTACTTCAGTTGAAGGTGCAGTTAGGTGTCTTTGTCAAGATGGATTTCTTGGTGATGGTTTTCTTAATGGATCAGGATGCTTGCAATCTTGTATCAAGAATGGACAGGAAACATATGGAGACAACTGTTACATCAAAAGACATGATCAAAGGAAAATGCTCATCATTGTAGGAATCCTTGGTCCAGTTCTCATTGTTGCTTCACTGATTGCACTGTTCTATCTTCTAAAAAAACCAGCAACAAAGCCAGGGATGTTTGACACAGAACAGGCCTATTACCACAGCATTTCGTTCCGAAAGCCGTATAAAACTCGCCTATTCAGCCACCATGATCTAGACAAAGCCACCAAAGGTTTTGAAGAAGGACAGAAGCTTATGGGTGGAACAAACGGCTCGATTTTCGCGGGAGTTCTCGGCGATGGATCCCACGTAGCAGTTCACATGCTAAAATGTGAGAATGAGAAGGACATAATCCAAGTGCTATCACAAATTGAGATTCTATCAAACATTGTGCATAGGAACATGGCTTGTGTTCTTGGATGCTGCATTGAATCTAGTTACACTCCTCTAGTGGTTTATGAGTATCCTGCCAATGGAACATTAGAGGAGCATTTGAATCCTCAATTCAAAGGAAATGGGATTGGTTTGGATTGGTATAGAAGATTGATCATAGCTGCAGAAACTTCTTGCTTTCTTGCATTCTTGCACTATGAGAATTCCCCTCCAATTTTCCACAACAATCTCAAGACTAGCTGCATCTTCTTGGATGATGATCTCTCGGTCAAGATCTCGGGGTTCGGCCTACTCAATTCTAAATTCAACTACCAAAACGAGCGCGAATGCTTCAAATTTTGCAAAAATGATGTCTATGACATGGGATTGCTCCTTCTGGAGATCATCTCAGGCTCAAGCTCTGCTCACCAGAAGTCCTCGCCAACCTCGGTATTGGAGAAAATAAGAGATGGGAAGCTAGAAGAGATTGTTGATCCTCTCCTCTCCTATCATGAGATGCCGAATTTTCGAAGAGAACAAGTGCAGGTTGTTGCAGACCTTGCAACAAGGTGTTTGCTGTTTGGTGCAGATGGGAAGCTTGGAATGGTTGATGTTGTGAGAGAGTTAACACACATAACAAAACACAGTCCTGATGCTGGGAATCTGAATGTGAAGGTGCCTGCATTGGAGGAAACATTCTCAAATTCAAGCCTTCTTCAAATGATTTCAATGTCTCCTGATTCTATGATCATCCATTGA 1956 0.4136 MVSIIVIIGLELLVFLLPFSCSLPPPNNLLPNPCNETCGKLQVPFPFFVNSSCSSISNAFNLSCSNSSNLFLKIDSQSYKVLEFFNDGLLVDFPGTSSELTCRMYNDLNSFGKTFEGKDQDHYGISFDNVVGLYDCDDSSLCKSDCETIDLPGCDNGSGGGSLGCCYPLSDHSIWHSGEGFSVFSEFGCRGFSSWAVVRGSNSGKHGVKLEWGVPLKKNSSSMEKVCAVNADMVNVTSVEGAVRCLCQDGFLGDGFLNGSGCLQSCIKNGQETYGDNCYIKRHDQRKMLIIVGILGPVLIVASLIALFYLLKKPATKPGMFDTEQAYYHSISFRKPYKTRLFSHHDLDKATKGFEEGQKLMGGTNGSIFAGVLGDGSHVAVHMLKCENEKDIIQVLSQIEILSNIVHRNMACVLGCCIESSYTPLVVYEYPANGTLEEHLNPQFKGNGIGLDWYRRLIIAAETSCFLAFLHYENSPPIFHNNLKTSCIFLDDDLSVKISGFGLLNSKFNYQNERECFKFCKNDVYDMGLLLLEIISGSSSAHQKSSPTSVLEKIRDGKLEEIVDPLLSYHEMPNFRREQVQVVADLATRCLLFGADGKLGMVDVVRELTHITKHSPDAGNLNVKVPALEETFSNSSLLQMISMSPDSMIIH 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc560g00001 651 Gene3D Phosphorylase Kinase; domain 1 327 430 - -
Stsc560g00001 651 Pfam Protein tyrosine and serine/threonine kinase 357 558 IPR001245 GO:0004672|GO:0006468
Stsc560g00001 651 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 26 613 IPR045274 GO:0007166
Stsc560g00001 651 Pfam Wall-associated receptor kinase galacturonan-binding 34 84 IPR025287 GO:0030247
Stsc560g00001 651 ProSiteProfiles Protein kinase domain profile. 354 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc560g00001 651 SUPERFAMILY Protein kinase-like (PK-like) 333 609 IPR011009 -
Stsc560g00001 651 Gene3D Transferase(Phosphotransferase) domain 1 432 515 - -
Stsc560g00001 651 Gene3D Transferase(Phosphotransferase) domain 1 516 618 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc560g00001 Stsc-Chr560 1117 4283 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc560g00001 33 611 Receptor kinase-like Gene Family AT2G23450 29.308 1.26e-55 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-3 Stsc560g00001 PK_Tyr_Ser-Thr 1.8e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc560g00001 - - gmx:100779880 840.106