Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc55g00019 ATGAAAATCCAGTGTGATGTGTGTGAGAAAGTTCCAGCAACAGTGATCTGTTGTGCAGATGAAGCAGCACTGTGTGCAAAATGTGATGTGGAGGTTCATAGTGCTAACAAGCTTGCAAGCAAACACCAGAGGCTTCTCCTTCAATGTCTCTCTAACAAGCTTCCAAGATGTGATATTTGCCAAGATAAGGCAGCTTTCATATTCTGTGTCGAAGACAGAGCACTCTTCTGTAAGGATTGCGATGAACCAATTCATTTAGCTGGCAGCCTCTCTGCGAACCACCAGCGTTTTCTGGCCACTGGAATCCGGGTGGCTTTGGGTTCTAGTGACTGCTCCAAAGGTGATGAGAAAAGCCACTCAGAACCATCTAATCCAGCTGCGCAAAAAGTTCCAGCGAAAGCTCCTTCTCCGCAAGCACCTAGCTTCACACCCCCTAGCTTTTGGCCAGTTGATCAACTATTGGATTTACCAGAGTTTGGATCATCAGAGAAAAAACAAGCAGAAGAATTTGGAGAGTTGGATTGGCTAGCAGATGTTGGTATCTTTGGTGAACAGTTTCCTCAGGAAACATTAGCTGCAGCTGAAGTTCCTCAGCTCCCTGTGTCACACACTAGTAGTGTTGCACCATACACTACTAAAGTCACTAATAAATCATACATGTCTAGCAAGAAGCCTAGGATTGAAGTCTTAGGTGAAATAGATGATGAGCATTTCACTGTGCCTGATTTAGGCTAA 735 0.4463 MKIQCDVCEKVPATVICCADEAALCAKCDVEVHSANKLASKHQRLLLQCLSNKLPRCDICQDKAAFIFCVEDRALFCKDCDEPIHLAGSLSANHQRFLATGIRVALGSSDCSKGDEKSHSEPSNPAAQKVPAKAPSPQAPSFTPPSFWPVDQLLDLPEFGSSEKKQAEEFGELDWLADVGIFGEQFPQETLAAAEVPQLPVSHTSSVAPYTTKVTNKSYMSSKKPRIEVLGEIDDEHFTVPDLG 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc55g00019 244 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Stsc55g00019 244 Gene3D Classic Zinc Finger 1 100 - -
Stsc55g00019 244 CDD Bbox1_BBX-like 5 47 - -
Stsc55g00019 244 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Stsc55g00019 244 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 243 - -
Stsc55g00019 244 MobiDBLite consensus disorder prediction 110 142 - -
Stsc55g00019 244 Pfam B-box zinc finger 52 94 IPR000315 GO:0008270
Stsc55g00019 244 SMART bboxneu5 4 47 IPR000315 GO:0008270
Stsc55g00019 244 SMART bboxneu5 52 99 IPR000315 GO:0008270
Stsc55g00019 244 CDD Bbox1_BBX-like 57 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc55g00019 Stsc-Chr55 115183 117844 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc55g00019 1 164 Orphan Transcription Factor Family AT1G06040 65.476 4.13e-69 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Stsc55g00019 zf-B_box 9.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc55g00019 - - gmx:100779183 381.333