Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc55g00017 ATGGATAAGGACAAATCCCCTGGTCATGGTGGAGGTTTCCCTCCTCCTTCTGGCAGTTTTTCGGGCTTCTCAGCTGCTGCAACCCCTTTTAATATGAAATCAGAGTTACCATCTTCATCAGCATCGTTTCCTCCGCTGCCAGTTTCGGCTGCAACCTCGGATTCTGCTAGTTTTAGTCATGACATTAGCAGAATGCCTGATAATCCTCCGAGAAATCGAGGCCACAGACGTGCTCACTCCGAGATTCTTACTTTGCCTGATGATATTAGCTTTGAAAATGACCTTGGCATAGTTGGAGGAAGTGCTGATGGCCCTTCATTCTCTGATGACACCGAGGAAGACTTACTGTCCATGTACCTTGATATGGATAAGTTCAATTTGCCGGATGCTACATGTGAGTTTGGAATTGGGGAGACTTCAATTGGTGGTGCAGCAACAGCAGCAGCAGTAGCATTGAGTTCCACATCGGCATCAGGAGCCGCTGCTGCCTCTTCAGAAGACAGCACTGTTGTTGGGACTAATGGAAGGCCTAGAGTTAGGCACCAGCATAGCCAGTCCATGGATGGATCGACAACCATCAAACCTGAGATCTTAGTCTCCGGTTCGGAAGAGGCCTCAGCAGTTGATTCCAAGAAGGCTATTTCGGCTGCAAAGCTTGCCGAGCTTGCCTTAATTGATCCAAAGCGTGCTAAGAGGATATGGGCAAACCGACAGTCTGCTGCTAGGTCGAAAGAAAGGAAGATGCGCTACATTGCCGAGCTTGAAAAGAGGGTACAGACATTACAAACTGAAGCAACATCCTTGTCTGCACAACTGGCTATCTTGCAGAGGGATACAGGTGGACTGAATGCTGAAAACAGTGAGCTGAAATTGCGGGTGCAATCGATGGAGCAACAAGTTCACTTGCAAGATGCACTGAATGATGCATTAAAAGAGGAAATTCAGCATTTGAGAGTAATAACCGGACAAGCTTTGCCAAATGGAGGAACACCTATGAACTTTGCTTCATCAGTTGGAGGAGAACAAAAATTCCAATCCAAAAATCAGTCCATGAACACCCTTTTAGCTGCCCAACAGTTTCAGCAACTCCAAATTCGCTCGCGGAAGCAACAGCATCAACAGCTATTCCAGCACCATCAACCTCAGAATCTGCAGCAGTTTCAGCAGCCACAACAGGAAAAGTAG 1185 0.4709 MDKDKSPGHGGGFPPPSGSFSGFSAAATPFNMKSELPSSSASFPPLPVSAATSDSASFSHDISRMPDNPPRNRGHRRAHSEILTLPDDISFENDLGIVGGSADGPSFSDDTEEDLLSMYLDMDKFNLPDATCEFGIGETSIGGAATAAAVALSSTSASGAAAASSEDSTVVGTNGRPRVRHQHSQSMDGSTTIKPEILVSGSEEASAVDSKKAISAAKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELEKRVQTLQTEATSLSAQLAILQRDTGGLNAENSELKLRVQSMEQQVHLQDALNDALKEEIQHLRVITGQALPNGGTPMNFASSVGGEQKFQSKNQSMNTLLAAQQFQQLQIRSRKQQHQQLFQHHQPQNLQQFQQPQQEK 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc55g00017 394 MobiDBLite consensus disorder prediction 21 62 - -
Stsc55g00017 394 FunFam probable transcription factor PosF21 227 280 - -
Stsc55g00017 394 SMART brlzneu 224 288 IPR004827 GO:0003700|GO:0006355
Stsc55g00017 394 MobiDBLite consensus disorder prediction 368 394 - -
Stsc55g00017 394 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 226 289 IPR004827 GO:0003700|GO:0006355
Stsc55g00017 394 CDD bZIP_plant_RF2 229 278 IPR044759 GO:0003700|GO:0006355
Stsc55g00017 394 Gene3D - 227 279 - -
Stsc55g00017 394 SUPERFAMILY Leucine zipper domain 228 278 IPR046347 GO:0003700|GO:0006355
Stsc55g00017 394 MobiDBLite consensus disorder prediction 1 77 - -
Stsc55g00017 394 Coils Coil 293 313 - -
Stsc55g00017 394 Coils Coil 244 278 - -
Stsc55g00017 394 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 40 392 - -
Stsc55g00017 394 MobiDBLite consensus disorder prediction 159 190 - -
Stsc55g00017 394 Pfam bZIP transcription factor 228 276 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc55g00017 Stsc-Chr55 98700 101395 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc55g00017 20 357 bZIP Transcription Factor Family AT1G06070 67.257 1.73e-152 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Stsc55g00017 bZIP_1 3.8e-08 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc55g00017 - - pcin:129313665 451.44