Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc55g00015 ATGCCGCGTCCGGCGAAATCAATGAGGCCGTCACACGAAGTTGGTGGCGCCGCTAGGGATTCCGACGAGCCCTCCAACAACCTCTGGGTTGGGAATCTAGCGCCGGACGTAACCGACGCTGATCTCATGGACCTCTTCGCGCAGTACGGCGCCCTCGACAGTGTTACCTCTTACTCGGCGCGTAGCTACGCCTTCGTATACTTCAAGCGCGTGGAGGACGCTAAGGCTGCGAAGAACGCTCTCCAAGGATTCTCCCTCCGCGGCAATTCCTTGAAGATCGAGTTTGCTAGACCGGCAAAGCCATGTAAACAGCTTTGGGTGGGTGGTATTAGCCCATCTGTGACAAAGGAAGAATTAGAAGCTGAATTTCGTAAATTTGGTAAAATTGAGGATTTTAAATTCTTCAGGGACAGAAATACTGCGTGTATTGAATTTTTCAATCTGGACGATGCTACTCAGGCCATGAAAATCATGAATGGGAAACGTTTAGGTGGTGAACACATTCGTGTAGACTTCCTTCGATCACATTCTACAAGAAAAGATCAGTTGTCTGATTATGGACCATTTCAAGGAAAAGGCTTTGGGCCTACTGATCCCTACACTGGACAAAAGAGACCTTTGCATTCACAGCCTCCAATGGGAAGGAGAAGTGATAGTCAACCCAGTAATGTTTTATGGATTGGTTATCCTCCTGCCATTCAGATTGACGAGCAAATGCTCCACAATGCCATGATTTTATTTGGAGAAATTGAGAGAATCAAGAGTTTCCCTTCAAGGAACTATTCATTTGTTGAATTCAGAAGTGTTGATGAAGCTCGGCGTGCAAAAGAGGGCCTTCAAGGACGCCTCTTTAATGATCCTCGAATTACAATTATGTATTCAAGCAGTGAACCTGGAAAAGATTACTCTGGTTTACATGCTAGTAGCGGTCCAAGAACTGATGCATACCTGAATGATCATCCATTTCGACCATTGCAAATGGATGCATTTGGTCATAGTCGTCCAGTGCTTCCGAATAATTTTCCTGGACAATTGCCACCAGGAGGTATTATTGGACCAAATGCACAAATGCGGCCATTTGGTTCTCAAGGGGGTCTTGAACCTCTTATTTCTGGTCCAGAGTTTAATGATATGAACATGCACCACAAATTTCAGGATGGTAGTTCCAAGGGTAACTTGGGTCCAAACAGGAAAAGGCCTTCTCCTCCTGCACCAGGGATGCTTCCTCCTTCTCCTGCATCAGGTGTTAGGCTCCCTTCAAGATCAGCTTCTGGTGGATGGGATGTGCTTGACATAAACCATATTCCAAGGGATTCTAAACGTCTGAGGTTAGATGGTGTTGATGATCCATTTCCTTTAAGGAATGTAGATGATCGTGGGTTGGACCAAATATATGGTCTTGATCCAGTGAGCGCAAGGATGGGAGCTGGAGTACTTGGTGCTGCACAACCTGAATCTGATCATATATGGCGAGGAATCATTGCAAAGGGAGGGACTCCTGTTTGTCAAGCTAGATGTGTCCCTATTGGGAAGGGGATAGCTACTGAGCTTCCCGAGGTTGTTGATTGCTCAGCTAGGACGGGATTGGATATACTCACAAAACACTATGCTGATGCAATTGATAGCGAAGAGGATTTTGCTTCATACACTGAATTCCTTCGCTATCTTAGTGCAAAAAACCGTGCGGGTGTTGCAAAATTTGCTGATAATACCACATTATTCTTGGTACCCTCTTCTGATTTCCTGACAAAAGTTCTGAAAGTCACTGGACCCGAACGTCTATATGGTGTGGTTCTTAAGTTCCCGCCAGTGCCAGGTAATTCTCCAATGCAACAGTCTTCGCATATGCCTATACCATCAAGTCAGTATATGCAGCAAATTCTTCCTTCACAAGCTGAGTATGGTTTGACTCCTGCAAGGGAAGAATCAGTTTTGCCAACAGATTACAACAGACTGTTGCCTGAGGAGTCTAAACTTCCTCCTAAACCAGTCTATCCAGCCACTAGTGGTCCCCCCTCAGTTCAAGCTGGGGTTCCAGATTATCCTACTGGTGATACTGCTGCTTCTGTGTCCCAAGGTGGAGTTGGATTAACTCCAGAGCTTATTGCAGCTTTAACTAACTTAATCCCTGGAACAACTCAATCATCTACAATTGATGGTGCAAAGTCTGCAGTAGGCTCCTCAACCGTGAGGCCTCCATTTCCTCCTGTTGCACCTAATGATGGTAACCAATCTCATTTATGGAAACAGGATCATCAAGTTGTTGATCAGTCTGTTCATCCTCCTCAACAATTGGGGAGTGTGTATAACATTCACAATGCTCAATATCAACCTTATCCACCACAATCTGCTCCTGGCTTCCCTAATCAAGTGGTCCCTGGCAGTTCTCATATTCAAGACACTGCTGCTAGCCTGCAGCAGCAGGGTACTGTTTCATCGAGACAGATGACTAATTACATGATGCCTTCTCATAGTGGACAGGTAGCTGCAACCACCCATGTCAGTCAGCAGTATCAGGTTGAAGTCTCCCCCAGCACCCAGGGAGGATATGGAGTGGTTCAAGCAACAGATGCCTCTGGTTTATATAATCCTCAGGCTTTCCAACAGCCAAATAATTATGTTGCTGCATCTAATCAAGTTCAGAGTGTTAATCCATCACAGCAACATGGTGTCCCGCCATATACAGTGGACCAAGTAAATGCAGACCCTAACAGTCAGCAACTTCCTCTCTATGGAGTTGGTCAGGGAACAACAGAAGTTGAGGCTGATAAGAACCAGAGGTACCAATCAACGCTACAGTTTGCTGCCAATCTGCTCCTCCAAATACAGCAGCAGCAGCAACAGCAACCCCCAGGTGGACATGGATCAGGAATTCAATAG 2880 0.4587 MPRPAKSMRPSHEVGGAARDSDEPSNNLWVGNLAPDVTDADLMDLFAQYGALDSVTSYSARSYAFVYFKRVEDAKAAKNALQGFSLRGNSLKIEFARPAKPCKQLWVGGISPSVTKEELEAEFRKFGKIEDFKFFRDRNTACIEFFNLDDATQAMKIMNGKRLGGEHIRVDFLRSHSTRKDQLSDYGPFQGKGFGPTDPYTGQKRPLHSQPPMGRRSDSQPSNVLWIGYPPAIQIDEQMLHNAMILFGEIERIKSFPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMYSSSEPGKDYSGLHASSGPRTDAYLNDHPFRPLQMDAFGHSRPVLPNNFPGQLPPGGIIGPNAQMRPFGSQGGLEPLISGPEFNDMNMHHKFQDGSSKGNLGPNRKRPSPPAPGMLPPSPASGVRLPSRSASGGWDVLDINHIPRDSKRLRLDGVDDPFPLRNVDDRGLDQIYGLDPVSARMGAGVLGAAQPESDHIWRGIIAKGGTPVCQARCVPIGKGIATELPEVVDCSARTGLDILTKHYADAIDSEEDFASYTEFLRYLSAKNRAGVAKFADNTTLFLVPSSDFLTKVLKVTGPERLYGVVLKFPPVPGNSPMQQSSHMPIPSSQYMQQILPSQAEYGLTPAREESVLPTDYNRLLPEESKLPPKPVYPATSGPPSVQAGVPDYPTGDTAASVSQGGVGLTPELIAALTNLIPGTTQSSTIDGAKSAVGSSTVRPPFPPVAPNDGNQSHLWKQDHQVVDQSVHPPQQLGSVYNIHNAQYQPYPPQSAPGFPNQVVPGSSHIQDTAASLQQQGTVSSRQMTNYMMPSHSGQVAATTHVSQQYQVEVSPSTQGGYGVVQATDASGLYNPQAFQQPNNYVAASNQVQSVNPSQQHGVPPYTVDQVNADPNSQQLPLYGVGQGTTEVEADKNQRYQSTLQFAANLLLQIQQQQQQQPPGGHGSGIQ 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc55g00015 959 Gene3D - 213 302 IPR012677 -
Stsc55g00015 959 Gene3D - 100 210 IPR012677 -
Stsc55g00015 959 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 98 IPR000504 GO:0003723
Stsc55g00015 959 CDD RRM_SF 105 171 - -
Stsc55g00015 959 Gene3D - 9 99 IPR012677 -
Stsc55g00015 959 PANTHER RNA RECOGNITION MOTIF-CONTAINING 20 96 - -
Stsc55g00015 959 FunFam Flowering time control protein FPA isoform A 101 215 - -
Stsc55g00015 959 SUPERFAMILY RNA-binding domain, RBD 100 196 IPR035979 GO:0003676
Stsc55g00015 959 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 223 296 IPR000504 GO:0003723
Stsc55g00015 959 MobiDBLite consensus disorder prediction 373 422 - -
Stsc55g00015 959 SUPERFAMILY RNA-binding domain, RBD 206 298 IPR035979 GO:0003676
Stsc55g00015 959 SMART rrm1_1 104 171 IPR000504 GO:0003723
Stsc55g00015 959 SMART rrm1_1 224 292 IPR000504 GO:0003723
Stsc55g00015 959 SMART rrm1_1 27 94 IPR000504 GO:0003723
Stsc55g00015 959 CDD SPOC_FPA-like 489 600 - -
Stsc55g00015 959 CDD RRM_SF 28 94 - -
Stsc55g00015 959 MobiDBLite consensus disorder prediction 182 221 - -
Stsc55g00015 959 Pfam SPOC domain 484 592 IPR012921 -
Stsc55g00015 959 FunFam Flowering time control protein FPA 18 100 - -
Stsc55g00015 959 MobiDBLite consensus disorder prediction 654 683 - -
Stsc55g00015 959 FunFam flowering time control protein FPA 216 308 - -
Stsc55g00015 959 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 175 IPR000504 GO:0003723
Stsc55g00015 959 MobiDBLite consensus disorder prediction 1 25 - -
Stsc55g00015 959 MobiDBLite consensus disorder prediction 398 412 - -
Stsc55g00015 959 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 235 289 IPR000504 GO:0003723
Stsc55g00015 959 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 168 IPR000504 GO:0003723
Stsc55g00015 959 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 92 IPR000504 GO:0003723
Stsc55g00015 959 SUPERFAMILY RNA-binding domain, RBD 18 100 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc55g00015 Stsc-Chr55 84228 89944 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc55g00015 20 286 Eukaryotic Initiation Factors Gene Family AT1G22760 23.264 1.36e-07 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc55g00015 - - gmx:100777570 1422.91