Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc55g00005 ATGAATAACTTAAACCCGAAACACAAAGTTAATGGCTCGCTACAAGAATTGAGCGCCGCTGACATGGGAAATTGCTTGGTCCCTAGACCATCTGCTTGGTCGCTTGATGAGAAAATGCTGAGGGCTCTGTCCTTCTTTAAGGAATCAGCTGGTGGTGGAATATTGGCACAAGTTTGGGTACCAATGAAGCATGGAAATGAGTTCATCTTAAGCACAAGTGAGCAACCCTATTTGCTAGATCAAATGCTTGCCGGATATCGTGAAGTGTCGAGGACGTTTACCTTTTCTACCAAAGGAAAACCAGGGTCTTTTCCAGGGCTTCCTGGGCGTGTGTTTATCTCCCATATTCCTGAATGGACCTCCAATGTTGGGTATTACAATAAAAGTGAGTACCTGAGGGTGGAGCATGCGATTAGTCATGAGGTTCGTGGATCAATTGCGGTTCCCATAACTGATCAGTGCTCTGAACCACCTTGTGCTGTACTAGAAATTGTCACTACAAAGGAAAAGCCTGATTTTGACAAAGAACTAGAAATTGTTAGCAGTGCACTCCAGCTTGTTAATTTAAGGACTACTTTGCCTCCGCGACTTCTTTCCCAGTGTCTATCAAGTAACAAAAGAGCAGCTTTAACAGAGATAATCGATGTGTTACGAGCTGTGTGTCATGCGCATAGGTTGCCACTGGCATTGACATGGATCCCCTGTTGTTATAGTGAGGGAATCGAAGATGAAACTTCAAGAATACGGATTAAAGATGGGCATAAAATTTCTGGTGAGAAATCTGTGCTATGCATTGAAGAATCAGCTTGCTATGTAAACGATAGAGAGGTGGGAGGATTTGTTCATGCATGTGTTGAACATCATCTTGAGGAGGGGCAAGGTATAGCTGGGAAAGCTCTTCAATCAAATCATCCATTCTTCTATCCCGACGTGAAGGCATATAATATTAGTGAATATCCGCTTGCTCACCATGCGCGCAAATATAAGTTGAATGCCGCCGTTGCAATCAGGCTAAGGAGTACATACACAAATGATGATGATTACATATTAGAATTCTTTCTGCCTGTCAATATGAGTGGAAGTCAAGAACAGCAACTTTTATTAGACAATCTATCAGTGGATAGTGACCATGATCCAGTCCAGCCTATGACCTTGAGAAACAAGGGAACTGAAGCTGCTCATAACCAGGCAATGAATGGATCAAGAAAGCAGATTGAGAAAAAGAGAAGTACAATGGAGAAGAATGTTAGCTTGAGTGTTCTCCAGCAATACTTCTCCGGTAGTCTTAAGGATGCGGCTAAAAGCATTGGTGTTTGCCCAACAACTCTGAAAAGGATATGCAGGCAACACGGGATTTCAAGATGGCCATCACGCAAGATTAATAAAGTGAATCGTTCGTTAAAAAAAATACAAACCGTGCTTGACTCGGTCCGGGGTGTGGAAGGAGGACTGAAGTTTGATCCTCACACTGGGGGTTTTGTGGCAGGAGGATCAATCAACCAAGAAGTTGATGCACATAAAAGTTTTCTCTTCCCTGAGAAATGTTCTGTAAAATATCCTGATCTGGCAGCACAAGATGCAGTCAACAGATCTCCAGCATCCGGTAGCAAAGGTGAGAATTTAGCCGTTAAATCTGAGGAAGATGATGATAATAATGTCTGTTTGTTGAGAAACCAGCTTCTACATTCAAACATGCTTATCCCAAATTCTAATGGTGAGTTGAAGAAAGACAAGGCTTCTTCTGTTAGTGTAGATTCAAAACCAATAGCCATGGATGATGATGGATTATGCCAAGCACGCCATCAGGTTTCTGTTTTTGAAAATTCTAGCCGTGATATAGCATATCACAATACAAGCTCCCTGGTTGCTGATGAGATGGAAATTCATCTGAATGGGGCTGAGAGGCCCGGCGAGCATAACAATCCTACTACTTCAAGCATGACAGACTCATCAAATGGTTCTGGTTCAATTTTGCGCCCTNNNNNNNNNNAGCATTCCAAAGTCAAATCACCTTGTATTGATAGTGGATCGAAAATTATTGTCAAAGCTTCCTACAGAGAAGATATGATCCGTTTCAAGTTTGATCCTGAAGCTGGTTGTGTCCAGCTGTATGAAGAAGTTGCAACCAGATTCAAATTACAAAGCAGATCGTTCCAGCTCAAGTATCTCGATGATGAAGACGAATGGGTGATGATGGTAAATGACTCAGATTTGCAAGAATGCATAGAAATATTGGATGATCTTGGCACCCGCACTGTGAAATTTCTTGTCCGCGACATGCCTAGTGGTTTGAGCAGTCGTGGCAGTAACAGTTGCTTCTTGGCAGACAGTTTATAA 2337 0.4223 MNNLNPKHKVNGSLQELSAADMGNCLVPRPSAWSLDEKMLRALSFFKESAGGGILAQVWVPMKHGNEFILSTSEQPYLLDQMLAGYREVSRTFTFSTKGKPGSFPGLPGRVFISHIPEWTSNVGYYNKSEYLRVEHAISHEVRGSIAVPITDQCSEPPCAVLEIVTTKEKPDFDKELEIVSSALQLVNLRTTLPPRLLSQCLSSNKRAALTEIIDVLRAVCHAHRLPLALTWIPCCYSEGIEDETSRIRIKDGHKISGEKSVLCIEESACYVNDREVGGFVHACVEHHLEEGQGIAGKALQSNHPFFYPDVKAYNISEYPLAHHARKYKLNAAVAIRLRSTYTNDDDYILEFFLPVNMSGSQEQQLLLDNLSVDSDHDPVQPMTLRNKGTEAAHNQAMNGSRKQIEKKRSTMEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDSVRGVEGGLKFDPHTGGFVAGGSINQEVDAHKSFLFPEKCSVKYPDLAAQDAVNRSPASGSKGENLAVKSEEDDDNNVCLLRNQLLHSNMLIPNSNGELKKDKASSVSVDSKPIAMDDDGLCQARHQVSVFENSSRDIAYHNTSSLVADEMEIHLNGAERPGEHNNPTTSSMTDSSNGSGSILRPXXXXHSKVKSPCIDSGSKIIVKASYREDMIRFKFDPEAGCVQLYEEVATRFKLQSRSFQLKYLDDEDEWVMMVNDSDLQECIEILDDLGTRTVKFLVRDMPSGLSSRGSNSCFLADSL 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc55g00005 778 MobiDBLite consensus disorder prediction 632 669 - -
Stsc55g00005 778 Pfam RWP-RK domain 415 463 IPR003035 -
Stsc55g00005 778 SUPERFAMILY CAD & PB1 domains 674 762 - -
Stsc55g00005 778 CDD PB1_NLP 679 759 IPR034891 -
Stsc55g00005 778 Gene3D - 675 758 - -
Stsc55g00005 778 Pfam PB1 domain 681 759 IPR000270 GO:0005515
Stsc55g00005 778 ProSiteProfiles RWP-RK domain profile. 395 483 IPR003035 -
Stsc55g00005 778 PANTHER PROTEIN NLP8 24 768 IPR045012 GO:0003700
Stsc55g00005 778 SMART PB1_new 678 760 IPR000270 GO:0005515
Stsc55g00005 778 MobiDBLite consensus disorder prediction 637 657 - -
Stsc55g00005 778 ProSiteProfiles PB1 domain profile. 678 760 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc55g00005 Stsc-Chr55 22333 26063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc55g00005 27 770 NLP Transcription Factor Family AT3G59580 50.308 0.0 701
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Stsc55g00005 PB1 2.6e-16 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc55g00005 - - ahf:112736799 1122.46