Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc558g00005 ATGGATCCTCCATCTAAGAGCTGGAGCATCCACACCAGATCCGAAATCATCGCCAAGTACCAGATCCTGGAGCGCGTCGGCGCCGGAGCTTACGCCGACGTGTACCGCGGCCGACGCCTCTCCGATGACCTAATCGTCGCGCTCAAAGAAATCCACGATTACCAGTCCGCGTTTCGCGAAATAGATGCGCTTCAGATTCTCCAGGGTTCACCAAACGTCGTCGTTTTGCACGAGTATTTTTGGCGCGAAGATGAGGACGCTGTCCTCGTTCTCGAGTTCCTAAGGACGGATCTCGCCACCGTCATTGATGAAGCCAAGAAGAAGAAGGGACTCCCCGTTGGAGAGATGAAGCAGTGGATGATGCAGATCCTCTCCGGTGTTGACGCGTGTCACCGGAACATGATCGTTCATCGGGATTTGAAGCCCGGTAATCTGTTGATCGGAGATGATGGAATTCTCAAGTTGGCAGATTTCGGACAGGCAAGGATTCTTGGGGAGCCAGGATATGATTCTTCTGAGGGGATTCCACAAAATTATGAACATGATGCATCTTCAAACCAAGCAGGGTCTGGAAATCAAGAGCAAGGAACTCTCCTTCGTGAAGAATATTTTAGAGTCTTGGATGAACTGAAGACAAAGAGATCTGCAGATGACGCTGATAAGGATACAAATATTCCTGATGGAAATACCTCCTGTCTTGCGACTTGCACAACAAGTGATATGGATGATGATCCTTTGAAATCCAACTTTAGTTATGAAGCAAGGGAGGACGAAGGAGAAGAAGAACCGGGTTGCCTCACGTCATGCGTTGGAACTCGCTGGTTTAGGGCCCCTGAGCTGCTTTATGGATCCACAAACTATGGTTTAGAAATTGATCTATGGTCGTTGGGATGTATATTTGCAGAGCTCTTAACACTGGAGCCCTTATTTCCTGGAACAGCCGATATTGATCAGCTTAGTAGGATTATTAATGTTTTGGGCAACCTTGATGAGAAAGCGTGGCCAGGTTGCTCCAAACTTCCCGATTATGGAATAATCTCATTTAATAAGGTGGAAGACCCTCCTGGTCTTGAAGCTTGCCTGCCCAATCGCTCCCCCAATGAAGTGTCCTTGGTAAAAAAGCTGGTTTGTTATGATCCGGCCAAGAGAGCTACGGCAATGGAGCTACTCCAAGACAAGTACTTTAATGAGGAGCCTCTTCCTGTTCCAGTTTCAGAGTTGCATGTTCCTTTGAACAGGAAGAGAGAAGATGAGAACTCCCCGTGGCATGATTACAATTACGCGGGTTCTGATTCTGACATGGAGGACTTTGGCCCTGTGAATATCACAAAAACTGGTACTGGTTTCTCCATACAGTTTCCATGA 1365 0.4769 MDPPSKSWSIHTRSEIIAKYQILERVGAGAYADVYRGRRLSDDLIVALKEIHDYQSAFREIDALQILQGSPNVVVLHEYFWREDEDAVLVLEFLRTDLATVIDEAKKKKGLPVGEMKQWMMQILSGVDACHRNMIVHRDLKPGNLLIGDDGILKLADFGQARILGEPGYDSSEGIPQNYEHDASSNQAGSGNQEQGTLLREEYFRVLDELKTKRSADDADKDTNIPDGNTSCLATCTTSDMDDDPLKSNFSYEAREDEGEEEPGCLTSCVGTRWFRAPELLYGSTNYGLEIDLWSLGCIFAELLTLEPLFPGTADIDQLSRIINVLGNLDEKAWPGCSKLPDYGIISFNKVEDPPGLEACLPNRSPNEVSLVKKLVCYDPAKRATAMELLQDKYFNEEPLPVPVSELHVPLNRKREDENSPWHDYNYAGSDSDMEDFGPVNITKTGTGFSIQFP 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc558g00005 454 Gene3D Transferase(Phosphotransferase) domain 1 9 197 - -
Stsc558g00005 454 MobiDBLite consensus disorder prediction 167 194 - -
Stsc558g00005 454 Gene3D Transferase(Phosphotransferase) domain 1 257 403 - -
Stsc558g00005 454 MobiDBLite consensus disorder prediction 177 194 - -
Stsc558g00005 454 ProSiteProfiles Protein kinase domain profile. 20 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc558g00005 454 SMART serkin_6 20 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc558g00005 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Stsc558g00005 454 FunFam Cyclin-dependent kinase F-1 11 105 - -
Stsc558g00005 454 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Stsc558g00005 454 SUPERFAMILY Protein kinase-like (PK-like) 13 401 IPR011009 -
Stsc558g00005 454 PANTHER CELL DIVISION PROTEIN KINASE 19 401 - -
Stsc558g00005 454 Pfam Protein kinase domain 262 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc558g00005 454 Pfam Protein kinase domain 20 169 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc558g00005 Stsc-Chr558 19443 21830 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc558g00005 4 454 Core Cell Cycle Gene Families AT4G28980 63.655 0.0 609
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Stsc558g00005 Pkinase 4.1e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc558g00005 - - ahf:112726382 844.343