Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc557g00006 ATGGGGGTAATGCTTGGTAAATATTTGAGTTTCTGCCATTCAGAGCATGCAAGTTCATCCAAGAAGCTGTATCCATCAATAATTGAAGAGCTGTGCCCTCAGTTTTCTCTTGAAGATCTTAGGAAATCAACCAACAACTTTGATGCAAATCATTTAACTGAAATATCAGCATATAATAGAGTATACAAATGTTGTATCAGACATAATGGTGCAAGTGATTTCACAGTAGCATTGAAGAGGTTGAACTATGAAACCGACCTGTGGAAGTTCAAGAAGGAAATCGAGTTCCACTGCCAGCTTCACCATCCAAATTTAGTCTCCCTTATAGGATTCTGCAACCACAAAGATGAGAAGATTCTTGTGTATGAGCACATGTCCAATGGTTCTCTCTATGATTACATATGTTCCATGAATATAGAGCAATTGTCATGGAAGAAAATTTTAGAGATATACATTGGAGCAGCAAAAGGACTGCACTATCTTCACACAGGAACCAAGCGCCCCATCTTTCACTGTGACATGAAGCCCCATAACATTCTTTTGGACAAGAACATGGTACCTAAGCTCTCACACCTTGGATTTTCCTTGCAGGGGCCACCTTTGAATTCAAAGCCAAAACCAATAAAAGTTGACATGGTTATGGGTTCAGCTGGTTACATTGCACCTGAGCATGTCCAAACCAAAATCTTCACAGAAAAATGTGATGTTTACTCATTTGGTATGGTCCTAATAGAAGTTGTATCCACTACCTGCAAGCACACCATCTTTGACAAAATCAGTATGTTGGAGAGGTCATCAGATTTGTCTCTAGATCCATTTGATTTACTGAATCCATCTGTGGAGATATCTGAAATGTTGGAGAGGTTCTCAGTTGATGATATTATTGATCCAATTCTGATGAGGAAGATGGCACCAGAAAGTTTGGCAGTATTCATAGACGTCACAAAAAGATGCTTAAGCAGAGAAGCCAATGAAAGACCAAATATAGGTGAAGTAGAGGTTGAACTTGAGCTAGCACTAGCACTGCAAGAAGAGGCCGATGACCGGAATCATGCTGGTAGCTGGAGATTATAA 1074 0.3976 MGVMLGKYLSFCHSEHASSSKKLYPSIIEELCPQFSLEDLRKSTNNFDANHLTEISAYNRVYKCCIRHNGASDFTVALKRLNYETDLWKFKKEIEFHCQLHHPNLVSLIGFCNHKDEKILVYEHMSNGSLYDYICSMNIEQLSWKKILEIYIGAAKGLHYLHTGTKRPIFHCDMKPHNILLDKNMVPKLSHLGFSLQGPPLNSKPKPIKVDMVMGSAGYIAPEHVQTKIFTEKCDVYSFGMVLIEVVSTTCKHTIFDKISMLERSSDLSLDPFDLLNPSVEISEMLERFSVDDIIDPILMRKMAPESLAVFIDVTKRCLSREANERPNIGEVEVELELALALQEEADDRNHAGSWRL 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc557g00006 357 SMART serkin_6 47 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc557g00006 357 SUPERFAMILY Protein kinase-like (PK-like) 21 336 IPR011009 -
Stsc557g00006 357 Gene3D Phosphorylase Kinase; domain 1 8 124 - -
Stsc557g00006 357 Gene3D Transferase(Phosphotransferase) domain 1 125 354 - -
Stsc557g00006 357 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Stsc557g00006 357 FunFam Receptor-like protein kinase ANXUR2 12 124 - -
Stsc557g00006 357 ProSiteProfiles Protein kinase domain profile. 47 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc557g00006 357 Pfam Protein kinase domain 58 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc557g00006 357 PANTHER OS07G0166700 PROTEIN 32 343 IPR045272 GO:0004714|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc557g00006 Stsc-Chr557 23534 28365 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc557g00006 26 348 Receptor kinase-like Gene Family AT5G59700 37.846 1.24e-61 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Stsc557g00006 Pkinase 2.9e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc557g00006 - - ahf:112797906 480.33