Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc557g00003 ATGTTTGGTGAGGTTGTTGCTGTTACCGGTGATGGAATGAACGATGCTCCTGCTTTGCATGAATCAGACATTGGACTTGCTATGGGCATAGCTGGAACAGAGATAGCCAAGAAAAATGCTCATGTGATTATAATGGATGACAATTTCACCACCATTGTCAATGTTGCTAAATGGGGAAGAGCGGTATACATAAACATTGTTGCTCTGGTTATCAACTTTGTTTCTGCATGTATCACAGGAGTTATTTTTAAAGGTTGTTCTAATCACTCAATTCAACTAGTTGATTCTTTTTTGTTTCTTTTATTTGTTGTAATTATGTAG 321 0.3676 MFGEVVAVTGDGMNDAPALHESDIGLAMGIAGTEIAKKNAHVIIMDDNFTTIVNVAKWGRAVYINIVALVINFVSACITGVIFKGCSNHSIQLVDSFLFLLFVVIM 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc557g00003 106 PRINTS H+-transporting ATPase (proton pump) signature 41 66 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc557g00003 106 PRINTS H+-transporting ATPase (proton pump) signature 9 25 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc557g00003 106 PANTHER CATION TRANSPORTING ATPASE 3 80 - -
Stsc557g00003 106 Gene3D - 55 82 - -
Stsc557g00003 106 Gene3D - 3 54 IPR023214 -
Stsc557g00003 106 Pfam haloacid dehalogenase-like hydrolase 6 48 - -
Stsc557g00003 106 SUPERFAMILY HAD-like 4 81 IPR036412 -
Stsc557g00003 106 PRINTS P-type cation-transporting ATPase superfamily signature 9 28 - -
Stsc557g00003 106 PRINTS P-type cation-transporting ATPase superfamily signature 33 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc557g00003 Stsc-Chr557 18748 19357 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc557g00003 2 80 Primary Pumps ATPases AT3G57330 78.022 4.28e-40 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc557g00003 K01537 - gmx:100785768 142.51