Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc557g00001 ATGGGTGTTCTTTCAATTTTGTCTTGTTTCAGCAAACCATCTTCTGATCCTAATCCAACACTCATGTCAGCAAAACCACCTTCATCAATTGTAAATGAACTCTGCCATCAGTTTTCTCTTGCAGAGATACAATCAGCAATAACAAGAAATCCCAACGAGTTAGCCAAACTAGGACAACCTGGTGGATTCAAGAGTGTATTCAAAGGTTATCTGCTAAATAGTAATATCCCAGTTGCCATCAAGAGGTTCAGCTTCGGATCATTTTCACAGCAGCAGTTCTCAGAGTTCAAGAATGAGATTGTCTTGCTTTGTCAGCTGCGGCATCCTAATCTCATGCCTCTTACCGGATTCTGTATCGAAAGAAACGAGTTGATTATCGTGTATGAATACATGTCTAATGGCTCCCTTTTTGATCATCTTCATCATATAAACCATGATTCACTCTCATGGAAGAGGAGGCTTCAAATTTGCATAGGAGTGGCTCGTGGGCTGCACTATCTTCACACTGGAGCCAAGCAACCTATCATTCACCGTCACATTAAGACAAGTAACATTCTCTTGGATGATAATTGGGAGCCTAAAGTTTCAGGTTTTTCACTGTCCAAAAGGGTTCCTCTAAGTATCTCAAAGTCATTGATTAGAGTGGAGTCAGATATAAGAGGAACATCTGGATATATTGATCCAGAATATGCAACAACCGGAGTTCTTACCGAAAAATCAGATGTGTTTTCATTCGGTGTAATCTTGTTAGAGGTTGTGAGTACAAGGACAATGCAAAAGGAACGTTTGTATAGACAGATTCATTCAATGAGGTCATACGCAGAGGAAATTGTTGATCCAGTTCTTAAGTCAAAGATTGATCCAGATTGCTGGAGAACATTTGTTGACATCACTGACAGATGTTTGACTGAAGATGGAAACGAAAGGCCAGACATGGGAGAAGTGGAGTTGGAGCTTGAACATGCACTGCAATTTCAAGAGGAAGCTGATGCCAAGATTACTGAACAAATGGGTTTTCCTTTCTTTTCAAGCTTGTCTTGTTTTGGTGACTCAAGTCCAAGGGTGACAAACCGATCATCTTCTGATCCAACACTCATCTCAACAGAACCACCTTCATCCATCATAACTGAACTCTGCCATCAGTTTACACTTGCACAGATACAATCAGTGACAAGAAACTTCGAAAAGTCTTTGGGAGAAAGCAGGTTTGGTATTGTTCACAGAGGCTATATAGGAGATACTTCTAAACCAGTTGCAGTAAAGAAGTATAAGAAGGACTCAGGTTTTGGTTTCTTGGAGTTCAAGAATGAGGTCGTCTTGCTTTCGCAGCTGCACCACCCCAACCTCATCTCTTTGGTTGGGTTTTGTGTTGAAAGAAATGAGTTAATTCTTGTAAATGAGTTGCTGTCTAAGGGTAATCTTTATCATCATCTTCATGGTCGAAACATCCGTCCACTTCCATGGAAGAGGAGGCTACAGATTTGCATTGGGGTGGCGCGTGGACTTCATTATCTTCACACTGGAGCCAAGTACATTATCATTCACCATGACATCAAGACAAGTAACATTCTTTTGGATGATAATTTGGAGCCTAAAATTTCAGGTTTGACACTGTCCAAAAGGGTATCTCTTAGGAGCTCAAAGTCATTGAAAAGGACTGAATCAGATATAAAAGGAACATATGGATATGAAGATCCAGAATATGAAAGAACCGGAGTGCTTACTGAAAAATCAGATGTATATTCTTTTGGTGTAGTTCTGTTAGAAGTTGTGAGTGCAAAGCTGCCATGGGAGATTTACAGGGAACACTTGGAAAACTGCAATCAGTCACTCAAGTCGTATGCAGAGAAAAATGTTGATCGATTTCTTAAGTCAAAGATTGATCCAGAATGTTGGAAAATATTTATTGACATCACTGAGAGGTGTTTGAAAGCAGAGGGAAGGGAGAGGCCAGACATGGGGGAAGTGGAAGTAGAGCTTGAACATGCATTGCAATTTCAAGAGGAAGCTGATGTCAAGAATTTCGGTTCAGAAAATTCTGATAGAATTTGA 2052 0.4025 MGVLSILSCFSKPSSDPNPTLMSAKPPSSIVNELCHQFSLAEIQSAITRNPNELAKLGQPGGFKSVFKGYLLNSNIPVAIKRFSFGSFSQQQFSEFKNEIVLLCQLRHPNLMPLTGFCIERNELIIVYEYMSNGSLFDHLHHINHDSLSWKRRLQICIGVARGLHYLHTGAKQPIIHRHIKTSNILLDDNWEPKVSGFSLSKRVPLSISKSLIRVESDIRGTSGYIDPEYATTGVLTEKSDVFSFGVILLEVVSTRTMQKERLYRQIHSMRSYAEEIVDPVLKSKIDPDCWRTFVDITDRCLTEDGNERPDMGEVELELEHALQFQEEADAKITEQMGFPFFSSLSCFGDSSPRVTNRSSSDPTLISTEPPSSIITELCHQFTLAQIQSVTRNFEKSLGESRFGIVHRGYIGDTSKPVAVKKYKKDSGFGFLEFKNEVVLLSQLHHPNLISLVGFCVERNELILVNELLSKGNLYHHLHGRNIRPLPWKRRLQICIGVARGLHYLHTGAKYIIIHHDIKTSNILLDDNLEPKISGLTLSKRVSLRSSKSLKRTESDIKGTYGYEDPEYERTGVLTEKSDVYSFGVVLLEVVSAKLPWEIYREHLENCNQSLKSYAEKNVDRFLKSKIDPECWKIFIDITERCLKAEGRERPDMGEVEVELEHALQFQEEADVKNFGSENSDRI 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc557g00001 683 ProSiteProfiles Protein kinase domain profile. 52 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc557g00001 683 FunFam Os07g0541700 protein 470 560 - -
Stsc557g00001 683 Gene3D Phosphorylase Kinase; domain 1 379 468 - -
Stsc557g00001 683 PANTHER OS07G0166700 PROTEIN 35 326 IPR045272 GO:0004714|GO:0006468
Stsc557g00001 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 513 525 IPR008271 GO:0004672|GO:0006468
Stsc557g00001 683 Gene3D Phosphorylase Kinase; domain 1 19 130 - -
Stsc557g00001 683 Pfam Protein tyrosine and serine/threonine kinase 394 658 IPR001245 GO:0004672|GO:0006468
Stsc557g00001 683 Pfam Protein tyrosine and serine/threonine kinase 56 316 IPR001245 GO:0004672|GO:0006468
Stsc557g00001 683 ProSiteProfiles Protein kinase domain profile. 392 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc557g00001 683 SUPERFAMILY Protein kinase-like (PK-like) 363 656 IPR011009 -
Stsc557g00001 683 SUPERFAMILY Protein kinase-like (PK-like) 35 315 IPR011009 -
Stsc557g00001 683 SMART serkin_6 51 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc557g00001 683 SMART serkin_6 392 664 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc557g00001 683 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 131 332 - -
Stsc557g00001 683 Gene3D Transferase(Phosphotransferase) domain 1 131 340 - -
Stsc557g00001 683 Gene3D Transferase(Phosphotransferase) domain 1 469 680 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc557g00001 Stsc-Chr557 5966 8464 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc557g00001 345 671 Receptor kinase-like Gene Family AT3G51550 43.027 1.47e-73 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Stsc557g00001 PK_Tyr_Ser-Thr 1.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc557g00001 - - adu:107486248 771.926