Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc555g00001 ATGGTGTCGATTAATGGGATGGAGCAGAGCAACGTGATCGCACCGTTCGTTATAAAGACATATCACATGGTCAACGATCCAAGCACCGATAAACTCATAGCGTGGGGCCCAGCCAACAACAGCTTCATCGTCGTCGACCCTCTGGACTTCTCTCACTCCTTACTCCCCGCCTTCTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAACTCAACACTTATGGTTTCAAAAAGGTGGATCCGGATAGGTGGGAGTTCGCAAACGAGTGGTTCTTGAGAGGCCAAAAGCACTTGCTCAAGAATATAGTTAGGAGGAAGCACGCTACGAGGAGCTATAATAATTCTTTGCATTTTAATAACCACCACCACGGTGGAAAGCAGCAGCTTTTGGCGGCGGAGGAGCTCGACGACGAAGCCATGATGGTGGAGATAGCGAGGCTAAAGGAGGAGCAGAAGGCTTTGGAACAAGAGCTTCAAGGGATGAATAGGAGGTTGGAGACAACCGAGAAGAGACCACAGCAAATGATGGCTTTTCTATGCAAGGTCGTCGACGATCCCGAGGTTCTATCAAGGGTTCTTCTTGAGAGGGAGACCAGGCAAATCGCCGACAAGAAGCGCCGCCTCATCACCACCGCCGCCACCTCCTCCTCTTCCTCCTTTGGAGTCGCCGTAAAGACAGAACTCGAGGACGACGAACCAACTGTCGGGAATATAATCTCTTCTTCGCCGGAGACCGGCTTCGAAATCGATAATTTTTGCCACGTGGCGTCGCCGTCGCCGCCGCAGGAGGCGGAGCCGATGGCCGTGGGGTGGTTGGGGCAGCAGAGGCTGAGGATTGGTCATCACTACCAACAACAGCAGGGGCATAATAATGGATATATCAATTGTAATTATAGTTGCGCTGCCATGCCAAAGCCGTTGAGTGTGGTGCCTCCGGCGGTGGCACCGCCGCAATTTGGGAGTTTAGGATGTGAGTCTAATGGCAGTGGTGGAGGTAAAGATCACGTGAACTTTTTTAGTGAAATGGCGGCGGAGAATAGTCCACGGCCTCCTTATCCGTTTTCCCTATTAGAAGGTGGATTCTAA 1086 0.5166 MVSINGMEQSNVIAPFVIKTYHMVNDPSTDKLIAWGPANNSFIVVDPLDFSHSLLPAFFKHNNFSSFVRQLNTYGFKKVDPDRWEFANEWFLRGQKHLLKNIVRRKHATRSYNNSLHFNNHHHGGKQQLLAAEELDDEAMMVEIARLKEEQKALEQELQGMNRRLETTEKRPQQMMAFLCKVVDDPEVLSRVLLERETRQIADKKRRLITTAATSSSSSFGVAVKTELEDDEPTVGNIISSSPETGFEIDNFCHVASPSPPQEAEPMAVGWLGQQRLRIGHHYQQQQGHNNGYINCNYSCAAMPKPLSVVPPAVAPPQFGSLGCESNGSGGGKDHVNFFSEMAAENSPRPPYPFSLLEGGF 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc555g00001 361 SMART hsfneu3 12 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc555g00001 361 PRINTS Heat shock factor (HSF) domain signature 54 66 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc555g00001 361 PRINTS Heat shock factor (HSF) domain signature 67 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc555g00001 361 PRINTS Heat shock factor (HSF) domain signature 16 39 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc555g00001 361 ProSitePatterns HSF-type DNA-binding domain signature. 55 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc555g00001 361 Coils Coil 137 171 - -
Stsc555g00001 361 FunFam Heat stress transcription factor B-4 8 106 - -
Stsc555g00001 361 Gene3D - 8 106 IPR036388 -
Stsc555g00001 361 SUPERFAMILY "Winged helix" DNA-binding domain 13 105 IPR036390 -
Stsc555g00001 361 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 10 227 IPR027725 -
Stsc555g00001 361 Pfam HSF-type DNA-binding 16 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc555g00001 Stsc-Chr555 17026 18564 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc555g00001 12 216 HSF AT3G24520 62.679 9.17e-89 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Stsc555g00001 HSF_DNA-bind 3.7e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc555g00001 K09419 - gmx:100794896 380.948