Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc5542g00001 ATGTGCTTATTGGCTCTATGCCATACTGCAATATCTGAAGTTGATGAGAAAACTGTCAAAGTTTCGTATGAAGCCGAGTCACTGGATGAGGCAGCTTTTTTCATAGCTGCTAGAGAACCTGGATTTGAGTTTTATGAAAGGACACAGTTAACTATTTTGCTGCGCGAGCTCAATTCTGCATCAGGCAAGATTACTGAAAGGACCTATAAACTTTTGAATATATTACAATTTACTATTGCAAGAAAGAGGATGTCGGTAATAGTGAGAGATGAGGAGGGTAAGCTACTACTACTTAGCAAAGGCGCTAACAG 311 0.3955 MCLLALCHTAISEVDEKTVKVSYEAESLDEAAFFIAAREPGFEFYERTQLTILLRELNSASGKITERTYKLLNILQFTIARKRMSVIVRDEEGKLLLLSKGAN 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc5542g00001 103 Gene3D - 1 103 IPR023299 GO:0000166
Stsc5542g00001 103 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 4 102 IPR023299 GO:0000166
Stsc5542g00001 103 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 3 102 - -
Stsc5542g00001 103 Pfam Cation transport ATPase (P-type) 19 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc5542g00001 Stsc-Chr5542 1176 1584 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc5542g00001 3 103 Primary Pumps ATPases AT1G13210 71.287 3.23e-42 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc5542g00001 K01530 - gmx:100799312 149.443