Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc550g00006 ATGAACAAGATCCTTTCTCTTTTCTTCATCTACCCTGTCATATTAGCTTCCAATTACTGCGAATTTTCTTGGTGTGAAGATAGCATCCTCATTCGTTTCCCCTTTCAACTACAAAGTAATCAGCTTCAACATCCTTATTGTGGCTACCCTGGTTTCAAATTAATCTGTATGAATGATACCAAGACAGTTCTAGATCTTCCATTCTCTGGAGAATTCTATGTACGCAACATAAACTATCTCACACAGCAGATACAAGTCTATGACCCTGATCACTGCCTTCCAAAACGTCTTCTAAGCCTCAACCTTTCAGGTACTCCCTTCGTCGCCACGTTGAGTCGGAACTACACTTTCTTAAGCTGCAAGTCTACCAATGCTGTGTCGCGGTCCGTTCCCATTGATTGCCTTAGCAATTCAACATATTTTGTATCTGCTGTGCCTTCAGTGGACTTGACCAATAATTCATTGCCAGACTCATGCAAAGTTATTGGAAAGCTTTCATTTCCGTTTTCAAGCACAACATTTGTGAGGAATATTGGTGATGATCTTACCCAAGATCTTCAATTATCATGGAATAAACCTGATTGCAGAGTGTGTGAATCACAAGGACAAATGTGTGGATTTGAAAGCAATACCAGTGATAGAATTAGTTGCTCCCATGATTATCATTCAGGTGGCACATCTAGGGGACTTCTAGCTTTCAGAATCATCTCATTATGCATAGTTGGACCAGCTTGCACCTTTGCTATTGTGTTAGCATGTTGTGTGTGCCACAGAGACAGAGTCTCCAATGCTGCTGCTGCAAGGAGAGCACAACAATTAGCAGCAATAACACCACATCCTCCTGAACCTCCCATCATTACCACTCTGGGTTTGGATGAAACTACAATTGACTCATATGAGAAGCTTGTTCTTGGTGAGAGTAAGAGGGTGCCAGGACCTAATGATGGAAGTTGCTGGATATGCTTGGCAGAGTATAATTCGAAAGAGACAGTTAGATGTATCCCTGAATGCAAACATTGCTTCCATTCTGATTGCATTGATGAGTGGCTTAGAATGAATTCCACATGCCCAGTTTGCAGGAACACTCCAACTCCTTCTCCTTCTCCTGCTCATGATGATGTTATGTCTAGCAGTGCAACTTCATTGGTCAATAATCATTGA 1161 0.4169 MNKILSLFFIYPVILASNYCEFSWCEDSILIRFPFQLQSNQLQHPYCGYPGFKLICMNDTKTVLDLPFSGEFYVRNINYLTQQIQVYDPDHCLPKRLLSLNLSGTPFVATLSRNYTFLSCKSTNAVSRSVPIDCLSNSTYFVSAVPSVDLTNNSLPDSCKVIGKLSFPFSSTTFVRNIGDDLTQDLQLSWNKPDCRVCESQGQMCGFESNTSDRISCSHDYHSGGTSRGLLAFRIISLCIVGPACTFAIVLACCVCHRDRVSNAAAARRAQQLAAITPHPPEPPIITTLGLDETTIDSYEKLVLGESKRVPGPNDGSCWICLAEYNSKETVRCIPECKHCFHSDCIDEWLRMNSTCPVCRNTPTPSPSPAHDDVMSSSATSLVNNH 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc550g00006 386 CDD RING-H2_EL5-like 317 360 - -
Stsc550g00006 386 SMART ring_2 318 359 IPR001841 -
Stsc550g00006 386 Pfam Wall-associated receptor kinase C-terminal 143 218 IPR032872 -
Stsc550g00006 386 Pfam Ring finger domain 317 360 IPR001841 -
Stsc550g00006 386 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 363 IPR046948 -
Stsc550g00006 386 Pfam Wall-associated receptor kinase galacturonan-binding 20 88 IPR025287 GO:0030247
Stsc550g00006 386 SUPERFAMILY RING/U-box 311 367 - -
Stsc550g00006 386 MobiDBLite consensus disorder prediction 363 386 - -
Stsc550g00006 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 365 IPR013083 -
Stsc550g00006 386 ProSiteProfiles Zinc finger RING-type profile. 318 360 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc550g00006 Stsc-Chr550 33251 35876 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc550g00006 22 365 C3H Transcription Factor Family AT2G25410 43.266 1.30e-89 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc550g00006 - - aprc:113851081 483.026