Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc550g00004 ATGTTGGTCAAGCAGACTGTGAAAACCGAAATGCCGAACCTGAAACGGTGCAAGCTGGAAGAAGGAGAGGAAGCAGAGCATGATTCGGAGAGCTATGGTTGTTTCGGGAATCAGAAGAAGCGGAAGGTTAACGGATTATGCTCTCGCGATGCTGATGATTTTAGCAGTGGTTCTGGCTCTTGGTGCAGCGAAGGATCGTATTGGAATGGTGGTTCTGAGGTTCAGTCCAATTCAAATTCTGTACAATTGAACGGTAAAATGACAGCACGTGGCGGCGGCGGCGATGGGACTCGGCCGCCATTGTTGCGGTCGACACGTGGCCGCCATCAGTCCTTGCCATCGAGGTTCAGTGACTCGGTTCTTGATTCATGGAATAACCGAGGAATCAAATTGGAGGACACGGATTCCAGCTTTGAGGATGATACAGAAGAAGAGATGAAGAAGGGTGATAATTATTGCGGTGATCTTGAAGTGAATGTAGAGATGGAAAAGAATGGTTTTGTTAAAACTGAGAGTAACAGTTCTGTGCTTAGTTTTGAGGGTGTTTGGGCGAAGTGTGGGAAGAGGTACCCTGCTTGGCCTGCTGTGGTGATTGATCCTATCTTGCAGGCTCCAAAATCCGTCCTCAGCTGCTGCATTCCTGGCGCTCTCTGTGTTATGTTCTTTGGCTTTTCGAAAAATGGGACCCAAAGGGACTATGCTTGGGTGAAGCAGGGAATGATATTCCCCTTTTCAGAGTACATGGAAAGATTCCAGAGTCAGACCCGGTTGTACAAGAGCAAACCAAGTGACTTTCGCATGGCACTGGAGGAAGCAATGCTGGCTGTAGATGGTCTTCTTAACTCACAACTGGGAGTAGAGGAAGTAACTTATGTAAATGCTTATCCCAATGATCTTGTAGAGGCCCCAGCCATGCGTGTTGATGATGAATACTACTGCGAGGATCAAGATACACTATCTTGTGCCGGCTGTTATTTGATGTTGCCATGCAAAACAATGAAGAAGATTAAGGACCCAAGTGGTGCATCTCGATTTTATTGCAAACATTGCTTTAAGTTACAAAAATCAAAACAATATTGTGGCATTTGCAAAAAGATTTGGCACCATTCACATGGTGGGAATTGGGTATGCTGTGATGGTTGTAATGTTTGGGTGCATGCTGAGTGCGATAAAATTTCCAGTGAACTTTTCAAGGATCTTGAAAACACGGACTACTATTGCCCAGAATGCAAGGGAAATTTAAATCAGAAATTCCCGGTACCACAAACAAGCAAGTCAAAAAAGAAGTGTGTTGTGGAAAACAGATTGGTAGATAATAGCCAAAAATCTGGCGTTCCAGAGACGGTAGCAGTGGTGTGCAATGGCATGGAAGGACTCTACCTCCCAAAGCTTCATTTAATTATGTGCAAGTGTAGTTCTTGTGATTCAAGGAAGCAGACACCAAGTGAATGGGAAAGGCATACAGGTAGCAGAGCCAAAAAATGGAAACATAGTGTGAAAGTGAAAGACACGAAGCTCCCGCTAGAAAAATGGATCACAGAAAACATTTCACAAGATGGAGTTCCGCAGCAGTTAGATCAGCAGCAGGTACTTAGCTTTTTGCAAGAAAATTATGAGCCTGTTCATGCAAAATGGACAACAGAAAGATGTGCAGTTTGCAGATGGGTTGAAGATTGGGATGATAATAAAATTATTATTTGTAACAGGTGCCAAATAGCAGTCCACCAAGAATGCTATGGGGCAAAGAATGTTCAAGATTTTACTTCGTGGGTTTGTAGAGTATGTGAAACACCAGATGTTGAGAGAGACTGTTGCCTCTGTCCTGTAAAAGGTGGTGCTCTAAAACCAACTGATGTTGAGATGCTATGGGTTCATGTGACATGCGCTTGGTTTCAACCTCAAGTTGTTTTCCAAAATCATGAGGCAATGGAACCTGCGGTAGGAATACTGAGAATTCCTCCTAATACCTTTGTGAAGAAATGTGTGATCTGTAAACAAAGTCATGGTTCCTGTACGAGTTGTTGCAAGTGTGCTACTTATTTTCATGTGATGTGTGCTTCAAGAGCGGGATATAGCACAGAATTGCATTCTGTGGAGAAGAATGGGACACAAATAACAAAGAAGTTAATATACTGTGCAGTTCACAGGGTCCCAAATCCAGAATCTGTATTGGTTATACGTACTACCCTTGGGGTTTTCTCTCCCAGAACCTCTCTTCAAAATCCTAAGAGATGCTTCAGGGGGTCAAGGTTGGTTTCATCAAAGAATGTAGAGCTTATTCAATCTTCAACCTCTGAAGGAGACAAGATTGAGCCATTTTCTGCTGCAAGATGTCATGTATACCATAGATCCCTGAATAAGGCTCAAGTACCAATAATTCACTTGCTGAAGGGACCCAGCCATCATTCTTTAAGTGCAATAACTCAGTTGAACAGCTATAAGGATGCTGAAGATTCTAAAGTATTTACTTCTTTCAAGGAACGACTTCATTATTTACAGAAAATGGAAAAGCTTCGAGTTTGCTTTGGAAAATCGGGTATTCATGGATGGGGTCTTTTTGCTCGTAGAGATATACAAGAAGGAGAGATGGTTGTTGAGTATTGTGGTGAGCAGGTGAGGCGTAGTGTTGCTGATTTAAGGGAAGCAAAATACCGTGCAGAAGGAAAAGATTGCTACCTGTTTAAGATCAGTGAGGAAGTAGTAATTGATGCAACATACAAGGGCAATATAGCGCGGCTAATAAACCATTCTTGCATGCCAAATTGCTATGCAAGGATTATGAGTTTGGGTGACCAAGAGAGTCGAATTGTTCTCATTGCCAAGACGAATGTTTCTGCTGGCGAAGAATTAACGTATGATTACTTATTCGATCCAGATGAGCAGGATGAACTGAAAGTTCCTTGCCTTTGCAAAGCCCCCAATTGTAGGAAATTTATGAACTAG 2943 0.4281 MLVKQTVKTEMPNLKRCKLEEGEEAEHDSESYGCFGNQKKRKVNGLCSRDADDFSSGSGSWCSEGSYWNGGSEVQSNSNSVQLNGKMTARGGGGDGTRPPLLRSTRGRHQSLPSRFSDSVLDSWNNRGIKLEDTDSSFEDDTEEEMKKGDNYCGDLEVNVEMEKNGFVKTESNSSVLSFEGVWAKCGKRYPAWPAVVIDPILQAPKSVLSCCIPGALCVMFFGFSKNGTQRDYAWVKQGMIFPFSEYMERFQSQTRLYKSKPSDFRMALEEAMLAVDGLLNSQLGVEEVTYVNAYPNDLVEAPAMRVDDEYYCEDQDTLSCAGCYLMLPCKTMKKIKDPSGASRFYCKHCFKLQKSKQYCGICKKIWHHSHGGNWVCCDGCNVWVHAECDKISSELFKDLENTDYYCPECKGNLNQKFPVPQTSKSKKKCVVENRLVDNSQKSGVPETVAVVCNGMEGLYLPKLHLIMCKCSSCDSRKQTPSEWERHTGSRAKKWKHSVKVKDTKLPLEKWITENISQDGVPQQLDQQQVLSFLQENYEPVHAKWTTERCAVCRWVEDWDDNKIIICNRCQIAVHQECYGAKNVQDFTSWVCRVCETPDVERDCCLCPVKGGALKPTDVEMLWVHVTCAWFQPQVVFQNHEAMEPAVGILRIPPNTFVKKCVICKQSHGSCTSCCKCATYFHVMCASRAGYSTELHSVEKNGTQITKKLIYCAVHRVPNPESVLVIRTTLGVFSPRTSLQNPKRCFRGSRLVSSKNVELIQSSTSEGDKIEPFSAARCHVYHRSLNKAQVPIIHLLKGPSHHSLSAITQLNSYKDAEDSKVFTSFKERLHYLQKMEKLRVCFGKSGIHGWGLFARRDIQEGEMVVEYCGEQVRRSVADLREAKYRAEGKDCYLFKISEEVVIDATYKGNIARLINHSCMPNCYARIMSLGDQESRIVLIAKTNVSAGEELTYDYLFDPDEQDELKVPCLCKAPNCRKFMN 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc550g00004 980 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 351 417 IPR013083 -
Stsc550g00004 980 FunFam Histone-lysine N-methyltransferase 812 980 - -
Stsc550g00004 980 Pfam PWWP domain 182 275 IPR000313 -
Stsc550g00004 980 CDD PWWP_AtATX3-like 182 279 - -
Stsc550g00004 980 Pfam SET domain 849 954 IPR001214 GO:0005515
Stsc550g00004 980 Gene3D - 444 527 IPR010919 -
Stsc550g00004 980 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 980 IPR025780 -
Stsc550g00004 980 ProSiteProfiles Zinc finger PHD-type profile. 547 598 IPR019787 -
Stsc550g00004 980 ProSiteProfiles PWWP domain profile. 178 247 IPR000313 -
Stsc550g00004 980 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 538 598 IPR013083 -
Stsc550g00004 980 SMART PHD_3 549 596 IPR001965 -
Stsc550g00004 980 SMART PHD_3 359 411 IPR001965 -
Stsc550g00004 980 SMART PHD_3 660 716 IPR001965 -
Stsc550g00004 980 CDD PHD_TCF19_like 360 410 - -
Stsc550g00004 980 SUPERFAMILY Tudor/PWWP/MBT 182 283 - -
Stsc550g00004 980 Pfam PHD-finger 359 411 IPR019787 -
Stsc550g00004 980 CDD PHD_ATX3_4_5_like 549 595 IPR042011 -
Stsc550g00004 980 SUPERFAMILY SET domain 831 977 IPR046341 -
Stsc550g00004 980 ProSiteProfiles Post-SET domain profile. 964 980 IPR003616 -
Stsc550g00004 980 Pfam PHD-zinc-finger like domain 603 715 - -
Stsc550g00004 980 SUPERFAMILY FYVE/PHD zinc finger 357 416 IPR011011 -
Stsc550g00004 980 Gene3D SET domain 817 980 IPR046341 -
Stsc550g00004 980 CDD SET_SETD1-like 827 976 - -
Stsc550g00004 980 FunFam Histone-lysine N-methyltransferase 599 718 - -
Stsc550g00004 980 ProSitePatterns Zinc finger PHD-type signature. 550 595 IPR019786 -
Stsc550g00004 980 SUPERFAMILY FYVE/PHD zinc finger 547 612 IPR011011 -
Stsc550g00004 980 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 599 717 IPR013083 -
Stsc550g00004 980 SMART PostSET_3 964 980 IPR003616 -
Stsc550g00004 980 Gene3D - 177 281 - -
Stsc550g00004 980 SMART set_7 838 961 IPR001214 GO:0005515
Stsc550g00004 980 ProSiteProfiles Zinc finger PHD-type profile. 357 413 IPR019787 -
Stsc550g00004 980 ProSiteProfiles Extended PHD (ePHD) domain profile. 601 716 IPR034732 -
Stsc550g00004 980 Pfam PHD-finger 562 596 - -
Stsc550g00004 980 ProSiteProfiles SET domain profile. 838 955 IPR001214 GO:0005515
Stsc550g00004 980 PANTHER PHD FINGER PROTEINS 11 421 - -
Stsc550g00004 980 MobiDBLite consensus disorder prediction 73 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc550g00004 Stsc-Chr550 21701 28361 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc550g00004 550 702 C2H2 Transcription Factor Family AT3G14740 33.750 1.15e-19 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc550g00004 zf-HC5HC2H_2 1.9e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc550g00004 - - gmx:100793624 1501.88