Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc54g00009 ATGGTTTCTAGAGAGCAAAAGAGAGCAGCAATACTGCATGAGAAGCTGCAACTTCTTCGTTCAATTACTAACTCTCATGCTCTTAAGAAGACGTCAATTATAAAGGATGCATCAAAGTACATAAGAGATCTAAAGCAAAAAGTAGAAACACTCAATCAAGACATGGCGGCTGCACAAACATCAACTCCCCAAAATCCTATGCCTATGGTAAAAGTAGAAAGGGTAGAGAAGGGGTTTCTTATAAAGGTGGTGTCAGCAAAGAGTTGTCCAGGCCTTCTTGTTTCCATATTGGAGGTGTTTGAAGAGATGGGTCTCACTCTTATGGAAGCTAGGGTTTCTTGCACTGACACTTTTCGCTTTCAAGCTCTTGGAGGAGAAAATGAAGAGGATGGTGAAGGTATTGATGCACAAGCTGTGAAACTAGCAGTGGGGCAAGCAATCAAGAATTGGAGCCAACAAAGTACTGAGCATGATGATGATGAAGATGATCAACAGTGA 498 0.4157 MVSREQKRAAILHEKLQLLRSITNSHALKKTSIIKDASKYIRDLKQKVETLNQDMAAAQTSTPQNPMPMVKVERVEKGFLIKVVSAKSCPGLLVSILEVFEEMGLTLMEARVSCTDTFRFQALGGENEEDGEGIDAQAVKLAVGQAIKNWSQQSTEHDDDEDDQQ 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc54g00009 165 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 3 68 IPR036638 GO:0046983
Stsc54g00009 165 Coils Coil 34 61 - -
Stsc54g00009 165 Gene3D - 2 67 IPR036638 GO:0046983
Stsc54g00009 165 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc54g00009 Stsc-Chr54 34912 37218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc54g00009 5 143 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 29.333 2.62e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc54g00009 - - adu:107469282 280.411