Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc54g00001 ATGGCTTATTACTACTACTACTTCCTCTTGTTGGTTCTTGTTGCTACTGCTGCAATTTCTGAAGCAGATGCACAAACTAAGCTATCTAAAGATTTCTATTCCTACAGCTGCCCTAAACTGTTGCTTATAGTGAAGAATGAAGTCATAAAAGCCATTAACAAAGAGGCTCGCATCGGAGCTTCTTTACTTAGACTACATTTCCATGACTGCTTTGTAAACGGCTGTGATGCGTCAATTCTATTGGACGATACAAAAAACTTCATCGGAGAGAAAACGGCGGCTGCTAACAATAACTCGGCAAGAGGGTTCAACGTGATTGAAGACATTAAGGCCAAAGTGGAGAAAGCATGCCCCAGGGTTGTGTCATGTGCTGATATTCTTGCTCTGGCTGCTAGAGACTCTGTAGTTTATTTAGGAGGGCCTTCATGGGAAGTAGGCTTGGGAAGAAGGGATTCTACCACAGCTAGCAGAGCTGCTGCTAATAACTCTATTCCTGCACCCTTTTTCAGTCTAAGCTCTCTCAAGTCAAATTTTGCAAAGCATGGGCTTTCTGTGGAGGACTTGGTGGCTCTTTCAGGTGGACACACTATTGGCTTGGCTAGATGTGTACAATTCAGAGCACACATCTATAATGATTCCAACATTGATGCTTCCTTTGCCAAGTCCCTAAGGAGCAAGTGCCCTAGAAGAGGAAATGATGCTGTACTCGCACCCCTTGACCATCAAACACCGACAAAGTTTGACAATCTATACTACAAGAATTTGCTGGTTAAAATGGGTATTCTCCATTCAGACCAGGAGCTCTTAAATGGTGGTTCTACCAGTGCTCTGGTGAAGAAATTCGCTGCTAACAAGAACGAATTCTTTAAGGCTTTTGCCAAGGGCATGGTGAAAATGAGCAGCATCAAGCCTCTCACAGGTAAAAAGGGGCAGATCAGAATCCATTGCAGAAAAGTCAATTAG 963 0.4341 MAYYYYYFLLLVLVATAAISEADAQTKLSKDFYSYSCPKLLLIVKNEVIKAINKEARIGASLLRLHFHDCFVNGCDASILLDDTKNFIGEKTAAANNNSARGFNVIEDIKAKVEKACPRVVSCADILALAARDSVVYLGGPSWEVGLGRRDSTTASRAAANNSIPAPFFSLSSLKSNFAKHGLSVEDLVALSGGHTIGLARCVQFRAHIYNDSNIDASFAKSLRSKCPRRGNDAVLAPLDHQTPTKFDNLYYKNLLVKMGILHSDQELLNGGSTSALVKKFAANKNEFFKAFAKGMVKMSSIKPLTGKKGQIRIHCRKVN 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc54g00001 320 ProSitePatterns Peroxidases proximal heme-ligand signature. 187 197 IPR019793 -
Stsc54g00001 320 Gene3D Peroxidase, domain 2 165 299 - -
Stsc54g00001 320 ProSiteProfiles Plant heme peroxidase family profile. 27 320 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc54g00001 320 FunFam Peroxidase 165 299 - -
Stsc54g00001 320 Pfam Peroxidase 44 284 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc54g00001 320 SUPERFAMILY Heme-dependent peroxidases 28 320 IPR010255 GO:0004601|GO:0006979|GO:0020037
Stsc54g00001 320 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc54g00001 320 PRINTS Plant peroxidase signature 61 81 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc54g00001 320 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc54g00001 320 PRINTS Plant peroxidase signature 37 56 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc54g00001 320 PRINTS Plant peroxidase signature 254 271 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc54g00001 320 PRINTS Plant peroxidase signature 139 154 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc54g00001 320 PRINTS Plant peroxidase signature 238 253 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc54g00001 320 PRINTS Plant peroxidase signature 294 307 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc54g00001 320 PRINTS Plant peroxidase signature 186 198 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc54g00001 320 PANTHER PEROXIDASE 72-RELATED 21 319 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc54g00001 320 Gene3D - 31 320 - -
Stsc54g00001 320 ProSitePatterns Peroxidases active site signature. 59 70 IPR019794 GO:0004601
Stsc54g00001 320 CDD secretory_peroxidase 27 319 IPR033905 GO:0004601|GO:0042744
Stsc54g00001 320 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc54g00001 320 PRINTS Haem peroxidase superfamily signature 139 151 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc54g00001 320 PRINTS Haem peroxidase superfamily signature 187 202 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc54g00001 320 PRINTS Haem peroxidase superfamily signature 240 255 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc54g00001 320 PRINTS Haem peroxidase superfamily signature 59 73 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc54g00001 320 FunFam Peroxidase 31 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc54g00001 Stsc-Chr54 9423 10968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc54g00001 25 320 Peroxidase AT5G05340 59.396 5.79e-130 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc54g00001 K00430 - gmx:100793973 438.728