Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc546g00003 ATGTCCTTCAATCAATCAAAATCCGACAAGAGTGACGCTGTGTACCGAAAATCCGGGCGATCCGCCAGCTTTAATCAGCAGCGAGGCTCCTCCGGCGGTGCATACGGCAGGGGCGGCAGCGGTGGCGGTGCCGCACCTTCTCCGTCGCTATCCTCAAGCCGCAGTTTTAACAAGAAGTCTAATAATGCACAAGTTGGGGAATCAAGGGTAACCCCTACTCCGGCAACCGAGTCTAATAGTACTTATGCGACCAGAACTGTACCAAATGGTAGCCATGTACAACCTCATTTTCATGGAGGATCTGATGCACCAGTTACCAAAACCAATGTCCAGTCATCAGAATCCTCAAATTCCCAGAGAACAACCAGAGCTGTTCCAAAAGCTCCTACTTCTCAACCTCCCACCTTGAGTTCTGATTCAGCTGCTTCGACAACCCCTGATAAGGGAGATGCATCCAAGGCATTTCCTTTCCAATTTGGATCTATTAGTCCGGGTTTTGTGAATGGAATGTCTATTCCTGCTCGCACAAGCTCAGCTCCACCCAATTTAGATGAGCAGAAGCGTGCTCAGGCTCGCCATGATTCTTTTAAACCTGCTCCAGCACCAGCACCTCCTGTTCCAAAGCAGCACCCTGTGAAGAAGGATACAGGTATTACTGATCATTCTCATGCAGGGACTAGGGCAAAAAAAGATATACAGGCATCTGTACAGTTTGGCAGTCCCAGTCCGCAGATTCAATCTCAGGGTATGCCAACAGCATCTCTTCAGATGCCTTTACCAATGCCTTTGCCAATGGGAAATGCTCCACAAGTGCAGCAACAGGTCTTTGTTGCAGGCCTTCAACCTCATCAGATGCATCAAGGACTCATGCATCAGGGCCAAAACATGAGTTTTACTCCTCAAATGGGTCCTCAATTGCCCCATCAGTTAGGCAGCATGGGTATTAGCATTGGCCCACAATATTCCCCTCAACAAGGAGGAAAATTTGCTCTGCGTAAAACTACTCCTGTCAAGATAACTCATCCCGAGACACATGAGGAGCTTAGGCTTGATAAAAGGGCAGACACATACACAGATGGTGGGTCATCCGGTGCTAAGTCTCACTCTAGTGTGTCTTCTCAATCTCAACCTGCATTTCCATCTATGAATTACTATCCATCCAATTCGTACAGTGTCCATTCTCCCTTTTATCAACCCTCTAGTAGTAGTCAGATAACTCCAAATTCTCAGCAACCGAGATTTAATTATGCAGTGAGCCAGGGTCCACAAAATGTTAGTTTCATGAATTCATCTTCTCATAGTTCACTACCTGCTAATAAAATTGTCAATCATATTCCTGGCATTGTTGAACCATCAAACCCAAAATTTTCCCGAGATGTGCATAATACTATCCCTCCATCTTCAACAGGAGCAACTTCTGTGTCTGTTAGGTCTGGTGTTGTGGACTCGTCAGTTGCCAATTCCAATATCTCTGCTGCCCAAAAGACTCAAAAGAGTGACTCTGCAAGATCTTCAGCAGTATCTACTAATGCTAGCTCCTCTTTGCCACAGAAAGATGCTGAAACTTTCTCTGAAGTTTCTTTGGAACAGTCCAACTTATCCAGTGATTCTTCAGTTTTGAGCTCATTGCCAAAACAATCTGCTGCATATACTAAGGTCACAGCTGCTCCCATGAAGCATTCATCTGCTGTGAATGAGGAGGCTGTTTCAGTTGTGTCTAATAATGAAGAAAAGGGGAAGGAATCTCTCAGTAGGTCAAATTCTTTGAAAGATACTAATAAGGTACAGAAGGAAGGCCAACTACAACATCCGGTTGCTGTACAGTCTCCTACTGTGGCAAATGTGCCTTCCCAAGATGTTGAGAGATCTACTGGGGGTTCTGAAACTGTAGTATCGAAAACAAACCATTCTGCAGCTGTTACCAGTGAAGATGTCAAAGCAGCGACTGAAGATACATTATCAACCTCCTCTTTGAGTGTGCCTCATTCTGAAGCAAAAACTAATGGTGCTGCAGAACTTTCTGCTTCTGTTTCAGCTGATGGACCTGCTGCTCAAGCTGTGGATAGTTTGAAAACAAATGATGAGCTAGATGAATTTTCACAACTAGATAAACTGTCAAAGAATAAAGATTCAGAAATGGGTGAAAAAACTGAAATTTCATCTATTCAAGGATCTAAACGAGAGGTGGATGAATCTACAGGCTGTCCTCCGGAATATGTAAACCAAAGCTCTACTGCATTGGGTTCTTCTACAGAAGTTTGTTTGAGTAGAGGTGATATTGCAGTCGGTAGTGAAACTGTTTCTGCAAGTTCTGGAACATTAGACCAGTCTTCTGATATTCTAGAAACAACATCAGAACGTCGCAATGATGATTTAGAGAATGCTGGAAGTGTAGTTTCTCTTCCAGCACCAGATACTAATGATAGACCAATTCTAGATCAAAATAAGGTGAAAACTACATCCAAGGGGAAAAAGAAAAGAAAAGAGATTCTTCAGAAAGCAGATGCTGCTGGGTCAACCTCTGATCTTTATAATGCATACAAGGGACCTGAGGAAAAGAAAGATGCTGTTGTAAGTGCAGAGAAAGAGGACAGCGTTTCTACTTCTGGAAGTTTAGAGCCGTTTTCTACTGGTGCTGCTCAGCCAGATTGTATAACAAGTGAGCAATGTGGACAAAGTAAAGCTGAGCTTGATGATTGGGAGGATGCTGCTGACATGTCTACACCAAAACTTGAAGTTTCAGGTCAAAGTACTGACAGTTGTACCGTTACAGTGAAAAGGTACTCTCGAGATTTCCTTTTGAAGTTTGCAGAGCAGTGCACAAATCTTCCTGAAGGATTTGAAATCACGGCAGACATAGCTGAGTCTTTGATGGGTACCAATATTAGTAGTTCACGTGATCCACATCCTTCTCCTTCTCCAGGAAGGATTATTGATAGACCTAGTGGGATGTCTAGGATGGATCGGCGTGTAGGTGTTATTACTGAGGAAGACAAATGGAGCAAAGTTTCCAATGCTTTTCATGCAGGTATGCGTTTGGATGGTATTGGAGGTAATGCAGGATTTCACCAAATTCAAGGAGGCAGTTTTGGTGTTTTAAGGAATCCTCGCTCACCTCTGCCATATGCCGGAGCTGGAGGGATTCTTTCTGGGCCAATGCAGTCCATGGGAAATCTGGGAGGAATGCCAAGAAACAGCTCTGACAGTGAAAGATGGCAGCGCGCTTCTAGCTTCCAGCAGAGGGGTTTAATTCCTTCTCCTCAAAGTCCGTTGCAGATGATGCACAAGGCTGATAAGAAGTATGAGGTCGGTAAAGTGACAGATGCAGAAGAGGCCAAGCAGAGGCAATTGAAAGCTATATTGAATAAGTTAACTCCCCAGAATTTTGAGAAGCTTTTTGAGCAGGTAAAAGCAGTTAACATTGACAATGCAGTAACTCTTACTGGTGTCATCTCGCAAATATTTGAGAAGGCTTTGATGGAACCTACCTTCTGTGAAATGTATGCCAATTTCTGTTCACATCTGGCAGCTGAGCTGCCTGATTTTAGTGAAGACAATGAGAAGATAACTTTTAAGAGGTTATTATTAAACAAGTGCCAGGAAGAATTTGAGAGGGGTGAAAGAGAACAGGAAGAAGCAAACAAGGCCGATGAAGGTGAGGTCAAGCAGTCTGATGAACAAAGGGAAGAGAAACGAACGAAGGCTAGAAGACGCATGCTGGGTAATATCAGATTGATAGGAGAACTGTATAAGAAGAAAATGTTAACAGAGAGGATTATGCATGAGTGCATCAAGAAGTTATTAGGTCAGCATCAGGATCCAGATGAAGAAGATATTGAGGCTTTGTGCAAGCTCATGAGTACAATTGGGGAGATGATTGACCATCCCAAAGCCAAGGTGCATATTGATGTGTATTTTGAAAGGATGAGATCATTATCAAACAACATGAATTTATCTTCAAGGGTGAGGTTCATGTTGAAAGATGCCATTGATTTAAGAAAGAACAAATGGCAACAAAGGAGGAAAGTTGAAGGTCCAAAGAAGATTGAGGAGGTACATAGAGATGCTACACAAGAGCGGCAGGCCCAAACTGGTAGACTGGGTCGTGGTCTGGGCAATAATCCAGTAAGAAGAAACCCCATGGATTTTGGTCCAAGAGGGGCATCTATGTTACCTTCACCTGTTGCCCAAATGGGTGGAGTACGTGGGTTGCCTACTCAAATCCGTGGATATGGTCCACAGGACGTTCGTATGGATGATAGACATGAGGCTAGGATCCTATCAGTTCCGCTGAGTCAAAGATTGGGTGATGATTCAATTACCTTGGGACCCCAAGGGGGTCTTGCTAGAGGAATGTCGATAAGAGGCTCAACTGCAGTTTCAAGTTCAGGTAGTCTTAATGGTTATAGTAATTTACCAGAGGTCTCACCTTATATTTCTAGGGAGGACCTGGCACCAAGATATATCCCAGATAGATTTGCCGCTCCTGCTGCTTATGATCAACCCAGTGCTAAAGAGAGAAGTATGAATTATGGTAACAGTGATATGAGAAATGCAGATAGGAATTTTGACAGACCTGTTGCAACTTCACCTTCCTCTCAATTGCAAGGGACAACGGTCTCCCAGAATCCTCCTTCAGAAAGTATTTGGTCAGAAGAACGATTGCGAGACATGTCAATGGCAGCAATAAGAGAATATTATAGTGCTAGGGATGAGAAGGAAGTTGTTTTGTGTGTTAAAGATTTGAACTCTCCAAGCTTCCATCCTTCCATGGTATCAATTTGGGTCACAGACTCTTTTGAGAGAAAGAACACAGAGAGAGATCTTCTGGCTCAGCTATTAGTAAACCTTGTGAAGTCTCAGGATGGTACCTTGAGTCAAGCCCAGCTCATCAAAGGGTTTGAATCTGTTCTTAGCACTTTGGAAGATGCGGTTAACGATGCCCCAAAAGCACCAGAGTTTCTTGGCCGCATTTTTGCAAAAGCTATAACAGAGCATGTAATCTCTTTAAACGAGATTGGGCAGTTAATACATGACGGTGGAGAGGAACCTGGCAGTCTCTTAGAAGTGGGACTCGCGGCTGATGTTCTTGGAAGTACCTTGGAGGTCATACAAATGGAGAAAGGCGATGCTGTTCTAAGTGATATCCGGAGAAGCTCAAATTTGCGGTTGGAGACTTTCCGGCCGCCGAAACCATTGGAATCGAAGAAGTTAGAGAACTTTGTTTAG 5229 0.4374 MSFNQSKSDKSDAVYRKSGRSASFNQQRGSSGGAYGRGGSGGGAAPSPSLSSSRSFNKKSNNAQVGESRVTPTPATESNSTYATRTVPNGSHVQPHFHGGSDAPVTKTNVQSSESSNSQRTTRAVPKAPTSQPPTLSSDSAASTTPDKGDASKAFPFQFGSISPGFVNGMSIPARTSSAPPNLDEQKRAQARHDSFKPAPAPAPPVPKQHPVKKDTGITDHSHAGTRAKKDIQASVQFGSPSPQIQSQGMPTASLQMPLPMPLPMGNAPQVQQQVFVAGLQPHQMHQGLMHQGQNMSFTPQMGPQLPHQLGSMGISIGPQYSPQQGGKFALRKTTPVKITHPETHEELRLDKRADTYTDGGSSGAKSHSSVSSQSQPAFPSMNYYPSNSYSVHSPFYQPSSSSQITPNSQQPRFNYAVSQGPQNVSFMNSSSHSSLPANKIVNHIPGIVEPSNPKFSRDVHNTIPPSSTGATSVSVRSGVVDSSVANSNISAAQKTQKSDSARSSAVSTNASSSLPQKDAETFSEVSLEQSNLSSDSSVLSSLPKQSAAYTKVTAAPMKHSSAVNEEAVSVVSNNEEKGKESLSRSNSLKDTNKVQKEGQLQHPVAVQSPTVANVPSQDVERSTGGSETVVSKTNHSAAVTSEDVKAATEDTLSTSSLSVPHSEAKTNGAAELSASVSADGPAAQAVDSLKTNDELDEFSQLDKLSKNKDSEMGEKTEISSIQGSKREVDESTGCPPEYVNQSSTALGSSTEVCLSRGDIAVGSETVSASSGTLDQSSDILETTSERRNDDLENAGSVVSLPAPDTNDRPILDQNKVKTTSKGKKKRKEILQKADAAGSTSDLYNAYKGPEEKKDAVVSAEKEDSVSTSGSLEPFSTGAAQPDCITSEQCGQSKAELDDWEDAADMSTPKLEVSGQSTDSCTVTVKRYSRDFLLKFAEQCTNLPEGFEITADIAESLMGTNISSSRDPHPSPSPGRIIDRPSGMSRMDRRVGVITEEDKWSKVSNAFHAGMRLDGIGGNAGFHQIQGGSFGVLRNPRSPLPYAGAGGILSGPMQSMGNLGGMPRNSSDSERWQRASSFQQRGLIPSPQSPLQMMHKADKKYEVGKVTDAEEAKQRQLKAILNKLTPQNFEKLFEQVKAVNIDNAVTLTGVISQIFEKALMEPTFCEMYANFCSHLAAELPDFSEDNEKITFKRLLLNKCQEEFERGEREQEEANKADEGEVKQSDEQREEKRTKARRRMLGNIRLIGELYKKKMLTERIMHECIKKLLGQHQDPDEEDIEALCKLMSTIGEMIDHPKAKVHIDVYFERMRSLSNNMNLSSRVRFMLKDAIDLRKNKWQQRRKVEGPKKIEEVHRDATQERQAQTGRLGRGLGNNPVRRNPMDFGPRGASMLPSPVAQMGGVRGLPTQIRGYGPQDVRMDDRHEARILSVPLSQRLGDDSITLGPQGGLARGMSIRGSTAVSSSGSLNGYSNLPEVSPYISREDLAPRYIPDRFAAPAAYDQPSAKERSMNYGNSDMRNADRNFDRPVATSPSSQLQGTTVSQNPPSESIWSEERLRDMSMAAIREYYSARDEKEVVLCVKDLNSPSFHPSMVSIWVTDSFERKNTERDLLAQLLVNLVKSQDGTLSQAQLIKGFESVLSTLEDAVNDAPKAPEFLGRIFAKAITEHVISLNEIGQLIHDGGEEPGSLLEVGLAADVLGSTLEVIQMEKGDAVLSDIRRSSNLRLETFRPPKPLESKKLENFV 1742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc546g00003 1742 MobiDBLite consensus disorder prediction 336 380 - -
Stsc546g00003 1742 MobiDBLite consensus disorder prediction 45 91 - -
Stsc546g00003 1742 Gene3D - 1548 1742 - -
Stsc546g00003 1742 MobiDBLite consensus disorder prediction 1351 1379 - -
Stsc546g00003 1742 MobiDBLite consensus disorder prediction 1 226 - -
Stsc546g00003 1742 MobiDBLite consensus disorder prediction 862 884 - -
Stsc546g00003 1742 Gene3D - 1114 1349 - -
Stsc546g00003 1742 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 305 1741 IPR045208 GO:0003743
Stsc546g00003 1742 MobiDBLite consensus disorder prediction 450 475 - -
Stsc546g00003 1742 MobiDBLite consensus disorder prediction 588 674 - -
Stsc546g00003 1742 MobiDBLite consensus disorder prediction 456 475 - -
Stsc546g00003 1742 MobiDBLite consensus disorder prediction 1499 1548 - -
Stsc546g00003 1742 Pfam MIF4G domain 1114 1336 IPR003890 GO:0003723|GO:0005515
Stsc546g00003 1742 SMART ma3_7 1555 1669 IPR003891 -
Stsc546g00003 1742 Pfam MA3 domain 1559 1668 IPR003891 -
Stsc546g00003 1742 MobiDBLite consensus disorder prediction 847 861 - -
Stsc546g00003 1742 Coils Coil 1196 1216 - -
Stsc546g00003 1742 MobiDBLite consensus disorder prediction 360 380 - -
Stsc546g00003 1742 SUPERFAMILY ARM repeat 1550 1732 IPR016024 -
Stsc546g00003 1742 FunFam Eukaryotic translation initiation factor 4G 1548 1741 - -
Stsc546g00003 1742 MobiDBLite consensus disorder prediction 18 33 - -
Stsc546g00003 1742 SMART if4_15 1114 1336 IPR003890 GO:0003723|GO:0005515
Stsc546g00003 1742 FunFam Eukaryotic translation initiation factor 4G 1114 1349 - -
Stsc546g00003 1742 MobiDBLite consensus disorder prediction 962 983 - -
Stsc546g00003 1742 MobiDBLite consensus disorder prediction 170 184 - -
Stsc546g00003 1742 MobiDBLite consensus disorder prediction 338 356 - -
Stsc546g00003 1742 MobiDBLite consensus disorder prediction 703 750 - -
Stsc546g00003 1742 MobiDBLite consensus disorder prediction 490 527 - -
Stsc546g00003 1742 MobiDBLite consensus disorder prediction 104 147 - -
Stsc546g00003 1742 MobiDBLite consensus disorder prediction 703 725 - -
Stsc546g00003 1742 MobiDBLite consensus disorder prediction 1205 1234 - -
Stsc546g00003 1742 MobiDBLite consensus disorder prediction 1525 1548 - -
Stsc546g00003 1742 Coils Coil 1742 1742 - -
Stsc546g00003 1742 SUPERFAMILY ARM repeat 1109 1338 IPR016024 -
Stsc546g00003 1742 MobiDBLite consensus disorder prediction 736 750 - -
Stsc546g00003 1742 MobiDBLite consensus disorder prediction 555 686 - -
Stsc546g00003 1742 ProSiteProfiles MI domain profile. 1554 1678 IPR003891 -
Stsc546g00003 1742 MobiDBLite consensus disorder prediction 787 884 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc546g00003 Stsc-Chr546 15375 24101 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc546g00003 1 1742 Eukaryotic Initiation Factors Gene Family AT3G60240 43.887 0.0 1235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc546g00003 K03260 - gmx:100796636 2176.36