Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc539g00005 ATGAAAGTGATGAGTTACATGGCACAATGGAGAGGCATTGCAAAGGAAGCTATGGACCGAACAGCCATTGCTGTCAAGTTCCTCTGCTGCCTTCACATTACAGACGCCTACTTCTGTTCCCCAACTCATATTTATGGTCCTAGCATGCTCCCCACATTCAACATGGTAGGCGACATCGTTTTGGCTGAACACGTCTCTCAGAGGCTTGGCAAGGTTCGCCATGGCGACTTGGTTGTGGTTCGGTCCCCCTCGGACCCTAAAAAGTCCATCACCAAAAGGATTATGGGAATGGAAGGGGATACTGTTACTTACTTTGATCCTATGCTTGGTGATGCTACTCGTGTTGCTGTGGTGCCAAAGGGGCATGTTTGGATTCAAGGGGATAACATCTTTGCGTCCCGTGATTCACGGCATTTTGGCCCTGTTCCTTATGGCCTTATACAAGGAAAAGTGTTTTTCAGGGTTTGGCCACTTGATTGCATTGGAGTGCCGGGTCAATAA 501 0.483 MKVMSYMAQWRGIAKEAMDRTAIAVKFLCCLHITDAYFCSPTHIYGPSMLPTFNMVGDIVLAEHVSQRLGKVRHGDLVVVRSPSDPKKSITKRIMGMEGDTVTYFDPMLGDATRVAVVPKGHVWIQGDNIFASRDSRHFGPVPYGLIQGKVFFRVWPLDCIGVPGQ 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc539g00005 166 Pfam Signal peptidase, peptidase S26 113 156 IPR019533 GO:0004252|GO:0006465
Stsc539g00005 166 Pfam Signal peptidase, peptidase S26 24 106 IPR019533 GO:0004252|GO:0006465
Stsc539g00005 166 NCBIfam signal peptidase I 26 105 IPR000223 GO:0006508|GO:0008236|GO:0016020
Stsc539g00005 166 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 7 159 - -
Stsc539g00005 166 PRINTS Bacterial leader peptidase 1 (S26A) family signature 118 137 IPR000223 GO:0006508|GO:0008236|GO:0016020
Stsc539g00005 166 PRINTS Bacterial leader peptidase 1 (S26A) family signature 37 53 IPR000223 GO:0006508|GO:0008236|GO:0016020
Stsc539g00005 166 PRINTS Bacterial leader peptidase 1 (S26A) family signature 90 102 IPR000223 GO:0006508|GO:0008236|GO:0016020
Stsc539g00005 166 Gene3D Umud Fragment, subunit A 35 162 - -
Stsc539g00005 166 CDD S26_SPase_I 40 151 IPR019533 GO:0004252|GO:0006465
Stsc539g00005 166 SUPERFAMILY LexA/Signal peptidase 37 162 IPR036286 -
Stsc539g00005 166 FunFam Inner membrane protease subunit 1 35 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc539g00005 Stsc-Chr539 34421 37285 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc539g00005 49 162 MADS-box Gene Family AT1G29960 50.435 1.30e-37 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc539g00005 K09647 - qsa:O6P43_001117 246.128