Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc539g00004 ATGGTTGAAAAATGGGATGGGATGCTATCTTCAGATGGAAAATGTGAAATCGACATATGGCATTTTTTACAAAATTTGACCGGCGATATTATTTCCAAGACAGCATTTGGAAGCAGCTACGAAGAAGGAAAAAAGATTTTCGAGCTTTTAAAAGAGCAAGGTGGACTTATTACGAAATTATATTATGCCTTTATTCCAGGATCGTGGTTGCTACCAACAGCTACAAACAAGAGGATGAGAGAAATTAGCAAAGATATAGAAGCTTCAGTGAAGGTTATCATTAACGAAAGAGAGAAAACAATGAAGGCTGGAAAAGTCATGAACAGAGACTTATTAGGCATACTTTTGGAATCAAATCATAGAGAAATACAAGAACATTCCAACAATAAGGTTGTTGGAATGACAAGCCAAGAAGTAATTGAGGAGTGCAATGCATTCTACCTTGCTGGCCAAGAAACCACCTCGGTTCTTCTAGTTTGGTCAATGGTACTATTGAGTAGATATCCTGATTGGCAAGATCGCACTAGAGAAGAAGTTTTGCAAGTTTTTGGGGATCAAGATCCAAACCACGAGGGATTAAGTCGTCTTAAAATTATGACAATGATTTTATATGAGGTTCTAAGGTTATACCCTCCAAATATTTACTTCAATCGTGTTGTTCACAAAGATGTGAAACTTGGCAACCTTTTCCTTCCGGCAGGAGTACAAGTTTCCATGCCAATACTCTTGATTCATCATGATCCCAATATTTGGGGCGAGGATGCAACAGAGTTCAAACCGGAAAGATTCTCAGAAGGAGTTGCAAAGGCAACAAAAGGCCAAGCTTCATTCTTTCCATTCGGATTTGGTCCTAGAATATGCATTGGGCAAAATTTTGCTTTAATGGAAGCAAAGATTGTTTTGTCATTGCTTTTACAACGTTTCTCATTTGAGCTTTCCCCATCCTATACACATGCTCCCACTACTGTACTTACTCTCAATCCAAAGCATGGAGCTCATGTTATCTTACATAAATTGTAG 1020 0.3814 MVEKWDGMLSSDGKCEIDIWHFLQNLTGDIISKTAFGSSYEEGKKIFELLKEQGGLITKLYYAFIPGSWLLPTATNKRMREISKDIEASVKVIINEREKTMKAGKVMNRDLLGILLESNHREIQEHSNNKVVGMTSQEVIEECNAFYLAGQETTSVLLVWSMVLLSRYPDWQDRTREEVLQVFGDQDPNHEGLSRLKIMTMILYEVLRLYPPNIYFNRVVHKDVKLGNLFLPAGVQVSMPILLIHHDPNIWGEDATEFKPERFSEGVAKATKGQASFFPFGFGPRICIGQNFALMEAKIVLSLLLQRFSFELSPSYTHAPTTVLTLNPKHGAHVILHKL 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc539g00004 339 PRINTS P450 superfamily signature 201 212 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc539g00004 339 PRINTS P450 superfamily signature 149 166 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc539g00004 339 PRINTS P450 superfamily signature 287 298 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc539g00004 339 PRINTS P450 superfamily signature 278 287 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc539g00004 339 PANTHER CYTOCHROME P450 FAMILY MEMBER 1 332 - -
Stsc539g00004 339 Pfam Cytochrome P450 2 317 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc539g00004 339 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 280 289 IPR017972 GO:0005506|GO:0016705
Stsc539g00004 339 Gene3D Cytochrome P450 1 339 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc539g00004 339 PRINTS E-class P450 group I signature 138 155 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc539g00004 339 PRINTS E-class P450 group I signature 287 310 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc539g00004 339 PRINTS E-class P450 group I signature 158 184 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc539g00004 339 PRINTS E-class P450 group I signature 26 44 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc539g00004 339 PRINTS E-class P450 group I signature 277 287 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc539g00004 339 SUPERFAMILY Cytochrome P450 1 337 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc539g00004 Stsc-Chr539 19032 20955 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc539g00004 1 339 Cytochrome P450 AT3G14680 57.478 1.05e-145 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc539g00004 - K17873 gmx:100809929 528.48