Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc536g00004 ATGGTTTCTAGAGAGCAAAAGAGAGCAGCAATACTGCACCAGAAGCTGCAACTTCTTCGTTCAATTACTAACTCTCATGCTCTTAACAAGATGTCAATTATAAACGATGCATCAAAGTACATCAGAGATCTAAAGCAAAAAGTAGAAACACTCAATCAAGACATGGCGGCTGCACAAACGTCAACTCCCCAAAATCCTTTGCCTATGGTAAAAGTAGAAAGCCTAGAGAAGGGATTTCTTATAAAGGTGGTGTCAGCAAAGAGTTGTCCAGGTCTTCTTGTTTCCATTTTGGAGGTGTTTGAAGAGATGGGTCTCACTCTTATGGAAGCTAGGGTTTCTTGCACAGACACTTTTCGCTTTCAAGCTGTTGGAGGAGAAAATGAAGAGGGTGGTGAGGGTATTGATGCACAAGCTGTGAAACAAGCAGTGGGGCAAGCAATCAAGAATTGGAGCCAACAAAGTACTGATCATGATGATGATGACAATGATCAACAGTGA 498 0.4177 MVSREQKRAAILHQKLQLLRSITNSHALNKMSIINDASKYIRDLKQKVETLNQDMAAAQTSTPQNPLPMVKVESLEKGFLIKVVSAKSCPGLLVSILEVFEEMGLTLMEARVSCTDTFRFQAVGGENEEGGEGIDAQAVKQAVGQAIKNWSQQSTDHDDDDNDQQ 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc536g00004 165 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 3 66 IPR036638 GO:0046983
Stsc536g00004 165 Gene3D - 2 60 IPR036638 GO:0046983
Stsc536g00004 165 MobiDBLite consensus disorder prediction 145 165 - -
Stsc536g00004 165 Coils Coil 34 61 - -
Stsc536g00004 165 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc536g00004 Stsc-Chr536 27487 29555 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc536g00004 5 143 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 29.333 1.57e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc536g00004 - - adu:107469282 256.914