Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc536g00003 ATGGTTCTTCTCCAGCTTCAAGGCGAAATTCCAACATTGGATGATTGTATTAGAATATGGTCAGAGCAGATGGAGATTTTTAATGAACAAAAAGAGGATTTGGGTTTTCTTAGAGGAATTGTTGCTGCCTTCAAAGAACAAATTCACACTGATATACTTGTTAAACCAGGTAGCCATGGTCTTCCAATTCCTGCACATAAGTTTGTATTGGCAACAAGATCAGAAATCTTTAAGAACATGCTTGAGTGTGATGAATGCAAAGCTGCACCTAATAATCAAACCATAACCATACCCGACCTGAACCATGAAGAACTTTCATCTCTATTAGAGTTTCTCTACAGTGGCACATTACCTGAACAAACAATCGGGAGGGATGTCTACGCCTTATCACGCGCCGCCGATAAGTACGCGATCCCACACTTGTTAAGGTATTGCGAGAGGTACTTGTTGAGCTCACTCAACACTTCCAATGCACTCGAGACGCTCGAGATCGCCGACACGTGTTCCAATCAAGCCTTGAAGGAGACTACGTTGGAGTTCTTAGTTAAGAACATTGAACATGTTGTGACATCGCCTAGGTTTGAAGCCTTTGTGCATAGGAATCCACACTTAACTGTGCAATTGGTTTCTAGGGCTTTTGCAAATGGTTCCAAGTAA 657 0.4201 MVLLQLQGEIPTLDDCIRIWSEQMEIFNEQKEDLGFLRGIVAAFKEQIHTDILVKPGSHGLPIPAHKFVLATRSEIFKNMLECDECKAAPNNQTITIPDLNHEELSSLLEFLYSGTLPEQTIGRDVYALSRAADKYAIPHLLRYCERYLLSSLNTSNALETLEIADTCSNQALKETTLEFLVKNIEHVVTSPRFEAFVHRNPHLTVQLVSRAFANGSK 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc536g00003 218 ProSiteProfiles BTB domain profile. 50 121 IPR000210 GO:0005515
Stsc536g00003 218 CDD BACK 154 194 - -
Stsc536g00003 218 Gene3D Potassium Channel Kv1.1; Chain A 19 153 IPR011333 -
Stsc536g00003 218 Gene3D - 154 218 - -
Stsc536g00003 218 CDD BTB_POZ_ZBTB_KLHL-like 49 136 - -
Stsc536g00003 218 PANTHER BTB/POZ DOMAIN CONTAINING PROTEIN, EXPRESSED-RELATED 21 215 IPR044784 -
Stsc536g00003 218 Pfam BTB/POZ domain 45 152 IPR000210 GO:0005515
Stsc536g00003 218 SMART BTB_4 50 153 IPR000210 GO:0005515
Stsc536g00003 218 SUPERFAMILY POZ domain 36 152 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc536g00003 Stsc-Chr536 7908 10007 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Stsc536g00003 BTB 8.4e-20 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc536g00003 K10523 - gmx:100777561 323.939