Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc536g00002 ATGGATTGTTGTGTATGTACGAGCATGCCATTGATATTAAGGCCACCAAGGAACTCAATTTGTGGGGCTTGTTATGAAGGAGCTAGAACCATAATCACCATGATCAACAATCTCGAAACACAGAAAACAAAACCAAACTCTACTAATAATGGTTCTTCTCCAGCTTCAAGGCGAAATTCCAGTAAGACATTGGATGATTGTATTAGAATATGGTCAGAGCAGATGGAGATTTTTAATGAACAAAAAGAGGATTTGGGTTTTCTTAGAGGAATTGTTGCTGCCTTCAAAGAACAAATTCACACTGATATACTTGTTAAACCAGGTAGCCATGGTCTTCCAATTCCTGCACATAAGTTTGTATTGGCAACAAGATCAGAAATCTTTAAGAACATGCTTGAGTGTGATGAATGCAAAGCTGCACCTAATAATCAAACCATAACCATACCCGACCTGAACCATGAAGAACTTTCATCTCTATTAGAGTTTCTCTACAGTGGCACATTACCTGAACAAACAATCGGGAGGGATGTCTACGCCTTATCACGCGCCGCCGATAAGTACGCGATCCCACACTTGTTAAGGTATTGCGAGAGGTACTTGTTGAGCTCACTCAACACTTCCAATGCACTCGAGACGCTCGAGATCGCCGACACGTGTTCCAATCAAGCCTTGAAGGAGACTACGTTGGAGTTCTTAGTTAAGAACATTGAACATGTTGTGACATCGCCTAGGTTTGAAGCCTTTGTGCATAGGAATCCACACTTAACTGTGCAATTGGTTTCTAGGGCTTTTGCAAATGGTTCCAAGTAA 810 0.4136 MDCCVCTSMPLILRPPRNSICGACYEGARTIITMINNLETQKTKPNSTNNGSSPASRRNSSKTLDDCIRIWSEQMEIFNEQKEDLGFLRGIVAAFKEQIHTDILVKPGSHGLPIPAHKFVLATRSEIFKNMLECDECKAAPNNQTITIPDLNHEELSSLLEFLYSGTLPEQTIGRDVYALSRAADKYAIPHLLRYCERYLLSSLNTSNALETLEIADTCSNQALKETTLEFLVKNIEHVVTSPRFEAFVHRNPHLTVQLVSRAFANGSK 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc536g00002 269 Gene3D - 205 269 - -
Stsc536g00002 269 CDD BACK 205 245 - -
Stsc536g00002 269 SUPERFAMILY POZ domain 87 203 IPR011333 -
Stsc536g00002 269 CDD BTB_POZ_ZBTB_KLHL-like 100 187 - -
Stsc536g00002 269 Gene3D Potassium Channel Kv1.1; Chain A 70 204 IPR011333 -
Stsc536g00002 269 PANTHER BTB/POZ DOMAIN CONTAINING PROTEIN, EXPRESSED-RELATED 20 266 IPR044784 -
Stsc536g00002 269 Pfam BTB/POZ domain 96 203 IPR000210 GO:0005515
Stsc536g00002 269 ProSiteProfiles BTB domain profile. 101 172 IPR000210 GO:0005515
Stsc536g00002 269 MobiDBLite consensus disorder prediction 39 61 - -
Stsc536g00002 269 SMART BTB_4 101 204 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc536g00002 Stsc-Chr536 7879 10076 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Stsc536g00002 BTB 1.4e-19 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc536g00002 K10523 - gmx:100777561 415.231