Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc534g00004 ATGGTGTCACAACTTCTCTTAGTTCTATTCCTAACTCTTCCCTTATCCTTGTCTCTCCTCTTCTTTCGAAAACAAAAGAACAAAGCCTTTCCACCAGGTCCAAGAGGTCTTCCAATAATTGGAAATCTTCACCAATTAGATAATTCTTCACTTTATTTTCAGCTATTTGAACTCTCAAAGAAATATGGCCCTATATTCTCCCTTCAATTAGGTCTAAGGCAAGCAATTGTTATTTCATCTCCTAAATTGGCCAAAGAATTATTTAGAAACCATGATCGTGAAGTTGCTGGAAGGCCAAAGTTAACTGGTCAACAAAAATTGAGCTACAATGGCTTAGACATGTTCTTTTCCCAATACGATGATTATTGGAGAGAGATTAGAAAAATATGTGTTACCCATCTCCTTAGTGCTAAGCGTGTGTCAAGCTTTTCCTCAATAAGAGAATTTGAGGTGAAGCAATTGGTCAAGAAAATATCAAGCAATGCTTCATCAAATAAAGTGATAAATTTGAATGAGGTGTTGATGACTCTATCAAGCACTCTTATATGTAGGATTGCGTTTGGGAGAAGGTACGATGATGATGGAGTTGAAAGGAGTAAGTTCCATAGTTTGTTCAATGAGTTACAAGACATGGTGGTTACTTTCTTTGTTTCGGATTATATTCCTTTCATGGGTTGGATTGATAGACTCAAGGGTCTTCGTGCACGTCTTGATAGAACTTTCATGGAGTTTGATGAGTTCTTCCAAGAAGTTATTGATGAACACATGGATCCTAATAGAGACACTTCACAAGGAGAGGATATTGTTGATGTTTTGCTTCAATTGAAGAAACAACGTTCGTTCTCCTTTGATCTCACTTATCATCACATTAAAGCACTGTTATTGGATATACTTGTTGCGGCAACGGATACAACTGCAGCTACAATAGTTTGGGCTATGACCGCACTTATGAAAAATCCAAGAGTGATGAATAAAGTTCAAGAAGAAATTAGAAACTTTGGCAAAAAAAAAGATTTCTTAGACGAAGACGATATTAAAAAATGTAGTTATTTTAAGGCTTTGATGAAAGAAATATTAAGATTATACCTTCCCGCACCATTACTAGTGCCGAAAGAAACAAATGAAAAATGCACCATAGGTGGTTACGAAATTCCAGCTAAGACTATAGTTTATATTAATGGATGGGCTATTCATAGAAACTCTGAAACTTGGAAAAATCCAGAAGAGTTTTATCCAGAGAGATTTTTGAAAAGTACAATTGATTTTAAGGGTCAAGATTTTGAGCTAATTCCATTTGGAGCGGGTCGTAGAATTTGCCCAGGCATGCATATGGCACTTGTAGCACTTGATCTTCTGCTTGCTAATCATCTTTATTCATTTGATTGGGAACTTCCGGAAGGAGTTAAAATTGAAGATGTTGATTTTGAAGCTTTGCCAGGATTGACTCAACATAAGAAGAATCCTCTTTACCTTATTGCCAAAACTAAGAAGGAATAA 1497 0.3601 MVSQLLLVLFLTLPLSLSLLFFRKQKNKAFPPGPRGLPIIGNLHQLDNSSLYFQLFELSKKYGPIFSLQLGLRQAIVISSPKLAKELFRNHDREVAGRPKLTGQQKLSYNGLDMFFSQYDDYWREIRKICVTHLLSAKRVSSFSSIREFEVKQLVKKISSNASSNKVINLNEVLMTLSSTLICRIAFGRRYDDDGVERSKFHSLFNELQDMVVTFFVSDYIPFMGWIDRLKGLRARLDRTFMEFDEFFQEVIDEHMDPNRDTSQGEDIVDVLLQLKKQRSFSFDLTYHHIKALLLDILVAATDTTAATIVWAMTALMKNPRVMNKVQEEIRNFGKKKDFLDEDDIKKCSYFKALMKEILRLYLPAPLLVPKETNEKCTIGGYEIPAKTIVYINGWAIHRNSETWKNPEEFYPERFLKSTIDFKGQDFELIPFGAGRRICPGMHMALVALDLLLANHLYSFDWELPEGVKIEDVDFEALPGLTQHKKNPLYLIAKTKKE 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc534g00004 498 PRINTS P450 superfamily signature 353 364 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc534g00004 498 PRINTS P450 superfamily signature 430 439 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc534g00004 498 PRINTS P450 superfamily signature 300 317 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc534g00004 498 PRINTS P450 superfamily signature 439 450 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc534g00004 498 CDD CYP71-like 61 489 - -
Stsc534g00004 498 SUPERFAMILY Cytochrome P450 31 494 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc534g00004 498 PANTHER CYTOCHROME P450 71B11-RELATED 13 494 - -
Stsc534g00004 498 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 432 441 IPR017972 GO:0005506|GO:0016705
Stsc534g00004 498 FunFam Cytochrome P450 83B1 19 492 - -
Stsc534g00004 498 Coils Coil 323 343 - -
Stsc534g00004 498 Gene3D Cytochrome P450 22 498 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc534g00004 498 Pfam Cytochrome P450 31 488 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc534g00004 498 PRINTS E-class P450 group I signature 177 195 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc534g00004 498 PRINTS E-class P450 group I signature 289 306 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc534g00004 498 PRINTS E-class P450 group I signature 429 439 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc534g00004 498 PRINTS E-class P450 group I signature 439 462 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc534g00004 498 PRINTS E-class P450 group I signature 309 335 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc534g00004 498 PRINTS E-class P450 group I signature 83 104 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc534g00004 498 PRINTS E-class P450 group I signature 352 370 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc534g00004 498 PRINTS E-class P450 group I signature 393 417 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc534g00004 498 PRINTS E-class P450 group I signature 59 78 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc534g00004 Stsc-Chr534 28450 30536 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc534g00004 6 496 Cytochrome P450 AT4G31500 45.161 5.45e-164 472
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc534g00004 - - gmx:100801312 691.034