Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc534g00003 ATGATACCACCACTACTTTTAGCACTATATCTTACTCTTCCTTTGTTTCTCTTCTTCCTCATCCGAAACCTTATAAACCCTAATAAGAGCAAAACCCTACCACCGGGGCCCAAAGGCCTTCCCATAATTGGTAACCTTCACAAGCTAGATAACTCAGTTCTTCACCTTCAGCTATGGAATATATCCAAGAAATTCGGGCCAATATTTACCCTTTGGTTAGGGTTTAGGCCTGCCGTCATTATTTCTTCGCCGCAACTCGCCGAAGAGGTGATGAAAATCCAAGACCCTAAAGTTTGTGGAAGGCCTAAGTTTTTTGCACAACAAAGAATCTCCTATGATGGGATTGAAATGGCATTTTCGCCATACGATAATTGTTGGAAAGAAATAAGAAAAATTTGTGTTTTGAATGCTCTTAGCGCTAAGCGCGTCGCAGGGTATTACTGGATAAGAAAACAAGAGGTAAAGAAACTAATGAAGAAGGTGTCCGAGCATGCTTCTTCGTCGGAAGTTATAAATTTGAAGTATCCACTCCTCAACCTCACCACGAATCTTGTATGCAAGATTGTTCTAGGGAGGACTTATGAAGATGAAGGCCCTGAGAGGGACAGATTTCTTAGGTTGTTTGATGAGTGCAATTCTTGGTTGGGAAGCTACTTTCTTTCGGATTATTTTCCTTTTTTGGGTTGGATTGATAGGTTGATGGGACTCCATGCACGTCTTGATAAGAATGTCAAGGAGTTGGATGAGTTCTACCAAGAAATCATTGATGATCACTTGGATCCTAATAGGAAGGTTTTGGAGGGAGAGGAAGATATAACTGATATCTTGCTTCAGATGCAAAAGGATCATTCAACTACATCCATGGAACTCACAAATGATCATGTAAAAGCAGCTATCATGGATTTTCTAGTAGGAGCAACAGATACAACTGCGGCCACAACGGTTTGGATCATGACAAGTCTAATTAAAAATCCAAGAGTGTTGAAGAAAGTTCAAGAAGAAATTAGGAGCATGGGAGGGAAGAAAGACTTCTTGGAAGAAGATGAAATTCAGAAGTTCACCTACTTCAAAGCCGTTATAAAAGAATCACTAAGATTGCATCTCCCAGCACCTATAGTTCCCAGAGCCACACATGAAACTTGCAACATTGGTGGATACCAAATCCCACCCAATACACTTGTTTATGTGAACACTTGGGCTATCCATAGAGACCCTCAATCTTGGAAAGACCCAGAAGAGTTTTATCCCGAAAGATTCTTGGACAGCGATATCAATCTTCGAGGGCAAGATTTCAAGCTTTTTCCGTTTGGCTCTGGTCGAAGAATGTGCCCTGGTTATCCTTTAGCATCCGCCGCGCTTGATCTTATTCTTGCTAATCTTCTAAATTCCTTTGATTGGGAATTGCCAAAAGGAATCGAAAGGGAAGACATAGATTATGAAAGGTTACCAGGAATTGCTCATCACAAGAAGAATCCTCTCTATCTTATCCCAAAGAGCCACATATAA 1506 0.4084 MIPPLLLALYLTLPLFLFFLIRNLINPNKSKTLPPGPKGLPIIGNLHKLDNSVLHLQLWNISKKFGPIFTLWLGFRPAVIISSPQLAEEVMKIQDPKVCGRPKFFAQQRISYDGIEMAFSPYDNCWKEIRKICVLNALSAKRVAGYYWIRKQEVKKLMKKVSEHASSSEVINLKYPLLNLTTNLVCKIVLGRTYEDEGPERDRFLRLFDECNSWLGSYFLSDYFPFLGWIDRLMGLHARLDKNVKELDEFYQEIIDDHLDPNRKVLEGEEDITDILLQMQKDHSTTSMELTNDHVKAAIMDFLVGATDTTAATTVWIMTSLIKNPRVLKKVQEEIRSMGGKKDFLEEDEIQKFTYFKAVIKESLRLHLPAPIVPRATHETCNIGGYQIPPNTLVYVNTWAIHRDPQSWKDPEEFYPERFLDSDINLRGQDFKLFPFGSGRRMCPGYPLASAALDLILANLLNSFDWELPKGIEREDIDYERLPGIAHHKKNPLYLIPKSHI 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc534g00003 501 PRINTS E-class P450 group I signature 357 375 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc534g00003 501 PRINTS E-class P450 group I signature 443 466 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc534g00003 501 PRINTS E-class P450 group I signature 294 311 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc534g00003 501 PRINTS E-class P450 group I signature 433 443 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc534g00003 501 PRINTS E-class P450 group I signature 62 81 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc534g00003 501 PRINTS E-class P450 group I signature 397 421 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc534g00003 501 PRINTS E-class P450 group I signature 314 340 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc534g00003 501 PRINTS E-class P450 group I signature 86 107 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc534g00003 501 PRINTS E-class P450 group I signature 180 198 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc534g00003 501 Coils Coil 328 348 - -
Stsc534g00003 501 SUPERFAMILY Cytochrome P450 34 497 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc534g00003 501 PRINTS P450 superfamily signature 443 454 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc534g00003 501 PRINTS P450 superfamily signature 434 443 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc534g00003 501 PRINTS P450 superfamily signature 305 322 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc534g00003 501 PRINTS P450 superfamily signature 358 369 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc534g00003 501 Gene3D Cytochrome P450 27 499 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc534g00003 501 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 436 445 IPR017972 GO:0005506|GO:0016705
Stsc534g00003 501 FunFam Cytochrome P450 83B1 20 496 - -
Stsc534g00003 501 PANTHER CYTOCHROME P450 71B11-RELATED 18 498 - -
Stsc534g00003 501 Pfam Cytochrome P450 34 491 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc534g00003 501 CDD CYP71-like 64 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc534g00003 Stsc-Chr534 25418 27509 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc534g00003 5 501 Cytochrome P450 AT4G31500 44.841 5.54e-148 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc534g00003 - - gmx:100801312 621.698