Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc531g00007 ATGGCAAGGGGAGGAAAAATTAGTGGCAAACGCAGCTTTAGGAATAGGGCTAGGTCAAAGGAAGGTGGTTCCGATGATTCCGATGAGGATTATGTGGTTTCAGATGAAGATGAAGAAGTGTCCGACTGTCCTGACGAATATAGCTCCTCTCTAGATGGATGTGCATCAGAGGAGAGTTATGATGCTTTTATAGACGAGGAGGAAGATGATGAAATTCAGCAAGTGAAGAAATTCAATAGATCAGAGGCCAGGAATGGTGTTTGTGGTCGACAGAAAAATACAAGTAAAAGCACACGAAAGAGGGGAAGGATTGCATATGCAAAACATGAAGAACAAGAAGAACAAGAAGCACCAGAAGAACAAGAAGCACAAGAAGAACAAGAACAGGAACAAACAAAAGTAGAAGAACAAGATGGGGATGGAGATGGAGATGGATATGGATATGAAGATGAAGATGAGGATGGAGGTGGAGGTAGGGAGGATGAGGATGGAGACGAGGATTTCAATTATGATGATAATGATGACAACGATGATGAGGATGAGGATGAGGATTTTGATTTTGATGATGATGAGGAGGAATTCTCACTAGAGGAAGGAGATTACTTAGTAGAGGAAGAAGAAACAAGGGAAAGAAAGAAGAAAAATAACAGCATGAAAGTGGGCAAGAAGATTTCGAAGAGAAAGGTTTCCATGACTTCTACCAAACTTCGAAAGAGGAAGAAATCTAGAGCTTCAAATAAGCCCTTGAAAAAGAAAAGAAGGAATAGAGGGTTAAAGAGGAAAGTAAGATGTAACGATGTGGATGATTTTATTGATAATGGCCCAGCCAGCGGGACAAAAAGGAGAAAAAAATTGCGTAGGCCAAGGAGAATGCTTTTACCTGAAGATTCCAATTCAGATGCATATGGTGTCCTTTCTGGTTCATCTGAGTATGAGTTTACTATCTCTGAAGAAGAAAGAGAACAGGTCAGAGAAGCCAAAGAATTGTGTCAAAGCTCTAGAAGGAATTTGAGGAGGTCTTCCCAATTAATGAAAAATGAAGAGATTGAATTGCATGAAGATCTACACCAACGAAGGAAGCCTCAAGGTCAAAAGGGTAAGGAAAAGATAGATGAATCTCAAGGAAGAAAGGTGGTAGTAGAAGTGCCTGAACGTGATCAGGTTTACCAGCCCACCGAAGAAGAACTCAGGAGCTATATTGATCCATATGAGGATGTTATTTGTTCAGAGTGCCATCTAGGTGGAGATGATGGCCTCATGTTACTATGTGATATATGTGATTCCCCTGCACATACATACTGTGTTGGTTTGGGTCGGGAAGTACCTGAAGGTAATTGGTATTGTGATGGTTGCAGACCAGTTGCTTTTTCATCTTCAAGCTCTCAAGTTCAAGAACGTGTGACTGATCCAAGTGTCCCGACTCAAAACTTGTCTGTTAGACCATCAATTGTTCTTAATGAACGAGAAAGTATAGACCTCAACTTGATATCTTCACCCCGTACATCTTTTAGCCAAGGATTTGGGCATATTTCATCTGCTAGAGTATTGGGTAGAAGTGTTGAAGTAGCTTCTCAAGTACCTGGAGGAGGGGCACCAACTTTATCAGAAAGACGCTGGATACACCGACATATTCACCAGATACTTTCGACATCTGGCAGAACCAGTGGTACTTCGGCTACCAATACATCAAGTAACTTGTATAACTCTCAAACCGATCAAAGCAGGGAAACAAATGCAACACAGCATACAAGGACACAGGATGCGGGAACATCATACCTCCCATTCTTAGACGAGAGATTATGCAACAATGTATCTCCACCAATGCAGAATGCAGATTCCTCCTCAATGAGAATTAGCAATGCAAGAAGGTCAGTGGTTCAGGATTCGGTTATGCTTGCCGACAGATCTATGAATGGGGTGCTATTGCCTGTACTTGTGGCATCAACACCTTCTGTAGCAGATTATGATCCAGTTCATCCGTTCAACAACAGAACTAACATGGTCACTGATGGTAGCTTGCCTGTTGCTATCAAAGAAGACAGTAACTTCGAAACCATAAAGCAGCAGTTGAAGTCTATGGTTAAAAGACACCTGCGGAGCTTATCTCGAGATGTTGATTTAGGGAATAATACTTTCAAGGACATTGCAAGGAGTTCCACACACACAGTACTAGCTGCATGTGGTCTTGAGCACAAGAAGAGTGAGGTTCGCTCTGTGCCTGCACCAGATGTGTGCCCCCACATTGAACTAATGGCAGGTGGACAAACTAGTTTGATAAGAGGTTGCTGCTCAACTTGCTTTGATTCTTTTGTAAAAGATGTGGTAAAAAATATTTTGGACAGAAGAATGTCCTCACAGTGGTTACGATTAGGTCTCTAG 2379 0.4182 MARGGKISGKRSFRNRARSKEGGSDDSDEDYVVSDEDEEVSDCPDEYSSSLDGCASEESYDAFIDEEEDDEIQQVKKFNRSEARNGVCGRQKNTSKSTRKRGRIAYAKHEEQEEQEAPEEQEAQEEQEQEQTKVEEQDGDGDGDGYGYEDEDEDGGGGREDEDGDEDFNYDDNDDNDDEDEDEDFDFDDDEEEFSLEEGDYLVEEEETRERKKKNNSMKVGKKISKRKVSMTSTKLRKRKKSRASNKPLKKKRRNRGLKRKVRCNDVDDFIDNGPASGTKRRKKLRRPRRMLLPEDSNSDAYGVLSGSSEYEFTISEEEREQVREAKELCQSSRRNLRRSSQLMKNEEIELHEDLHQRRKPQGQKGKEKIDESQGRKVVVEVPERDQVYQPTEEELRSYIDPYEDVICSECHLGGDDGLMLLCDICDSPAHTYCVGLGREVPEGNWYCDGCRPVAFSSSSSQVQERVTDPSVPTQNLSVRPSIVLNERESIDLNLISSPRTSFSQGFGHISSARVLGRSVEVASQVPGGGAPTLSERRWIHRHIHQILSTSGRTSGTSATNTSSNLYNSQTDQSRETNATQHTRTQDAGTSYLPFLDERLCNNVSPPMQNADSSSMRISNARRSVVQDSVMLADRSMNGVLLPVLVASTPSVADYDPVHPFNNRTNMVTDGSLPVAIKEDSNFETIKQQLKSMVKRHLRSLSRDVDLGNNTFKDIARSSTHTVLAACGLEHKKSEVRSVPAPDVCPHIELMAGGQTSLIRGCCSTCFDSFVKDVVKNILDRRMSSQWLRLGL 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc531g00007 792 PANTHER F18C1.6 PROTEIN 1 373 - -
Stsc531g00007 792 SMART PHD_3 407 452 IPR001965 -
Stsc531g00007 792 MobiDBLite consensus disorder prediction 141 204 - -
Stsc531g00007 792 SUPERFAMILY FYVE/PHD zinc finger 379 453 IPR011011 -
Stsc531g00007 792 Coils Coil 109 140 - -
Stsc531g00007 792 ProSiteProfiles Zinc finger PHD-type profile. 405 454 IPR019787 -
Stsc531g00007 792 Coils Coil 316 336 - -
Stsc531g00007 792 MobiDBLite consensus disorder prediction 215 260 - -
Stsc531g00007 792 MobiDBLite consensus disorder prediction 28 45 - -
Stsc531g00007 792 MobiDBLite consensus disorder prediction 1 304 - -
Stsc531g00007 792 Pfam PHD-finger 407 453 IPR019787 -
Stsc531g00007 792 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 394 473 IPR013083 -
Stsc531g00007 792 MobiDBLite consensus disorder prediction 350 376 - -
Stsc531g00007 792 MobiDBLite consensus disorder prediction 550 589 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc531g00007 Stsc-Chr531 20396 23374 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc531g00007 402 451 C2H2 Transcription Factor Family AT3G01460 46.154 3.44e-09 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc531g00007 PHD 1.2e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc531g00007 - - ahf:112695571 721.465