Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc531g00005 ATGAGTACCGAGGAGGAAGTTGCGCCACTCAATACTGTTTCTGTTGTTGAAGACATTCTTCAGAAGCGTGGAGGCCTCTTCGACGACAAGTTGGCGTCACGCCGAGACGAAGAAGCTTCGGCGAGAAGAAATGAAGCTACTGAATGGATGCGTAAGACGCTTGGAGTAGTGGCAGGGAGAGACTTGCCTGCGGAGCCTTCTGAAGAAGACTTCAGGATCGCCTTGCGTACCGGCATTATCCTCTGCAATGTTCTCAACAAAATTGTACCCAATGCAGTTCCCAAGGTAATTCAAGCTCCAAAGGATTCTCCTATAGTTCCTGATGGAACAGCACCGACTGTCGTTCAGTACGTTGAAAATGTGAAGAATTTTATTGAAGCTTTGGGAGGATTGGGGATTCCCACCTTTGAAGATTCCGATTTGGAAAAGGGCGGAAATTTATCAAGGGTGGTGAGTTGTTTGTTAGAGCTGAAATCCTATGCAGAATGGGTACAGGGAGGGAAAATTGGGTCATGGAAATTAGATGGCCTTCCAAATTCAAAGCCACCCTTGATGAAAACGCTTCTAAGGAGAAACTCTGAACCATCCATGATGAAATCCATGGGGAACTCATTAGAGGAAAAAGATACCACTTGTGCTGCTATTGTCAATAATCCTAAGGCTGACCTCAGCGAAATGACTTCCAACTATCCTTCTTTACTTTCACTAGTTCGTGAACATTTGTCAAATAAGAGGACAGAGGAAATTCCTTATGTTGTGGAGTCCCTGCTTGCTAAAGTCATGAATGAATTTGAACATCGGTTGCTTGAGCAACAAGAAAGGCTTAGAACAATTCAACTTGGAAAAGCATCATCATTTAACAAGCTAGAGGAATATCGATTGCCTGAACAACAACAAACGCTTAGACCAATTCATCAAGAAGGAACATTATCAGCCAGACCAGATGAACATCAATTGCTTGAACAACAAAAAGTGCATATTAGAGCAAGTCAACAAGAAAAAGCACCATCATCTAAACCAGATCAGCATCAATTGCTTGAACAACAAGAAACGCAGCTTAGAGCAATTCAAACAGATAAAGTATCATCATCTAAACCAGGACCTTTGGTCTCAAAAGCTACTCCTGTCGACGAAGAGGAATTGAAAACTATAGTCCATCAAACTAAATCAGGAGTGCTAGTTATGCACAAGAAGTACCAGGAAGAGTACCTCATTCTATGCAAGCATGTGCGCAGCTTGGTTTCTGCGGCTTCAGGATATCAAAAAGTTCTTGAAGAGAATCGTAAGTTATACAATCAAGTGCAGGATTTAAAAGGGAATATTAGGGTGTACTGCAGAGTTAGACCCTTCTTGGGCGCTCCTTCACCCACTAACAGTGTTGGTGCCATTGATGATGGAAGCATCTCAATCATAACACCTTCAAATTATGGGAAAGATGGGAGGAAGACATTCAATTTTAACAAATGTTTTGGTCCTACTGCAACTCAAAGTTGGTCCTTTCATTGTGTTCTTCGACTATATTTTTATTTATTTATGTATGTATATGCGTATGCGTATGCGTTACTCACTTCTGGGCCAGATGACCTTACAGAGGATACCATGGGTGTCAACTACCGTGCTCTGAATGATCTTTTCCAAATCCAAGAACAGAGGAAAGACACCATTATCTATGAGATTGGTGTTCAAATGCTTGAGATTTACAATGAGCAAGTCAGAGATCTATTATGCACAGATGGGGCTATCAAAAAATATCCTTCCTTTATGATATGCAGTAATTTATTTATTTATTTGTAG 1794 0.4119 MSTEEEVAPLNTVSVVEDILQKRGGLFDDKLASRRDEEASARRNEATEWMRKTLGVVAGRDLPAEPSEEDFRIALRTGIILCNVLNKIVPNAVPKVIQAPKDSPIVPDGTAPTVVQYVENVKNFIEALGGLGIPTFEDSDLEKGGNLSRVVSCLLELKSYAEWVQGGKIGSWKLDGLPNSKPPLMKTLLRRNSEPSMMKSMGNSLEEKDTTCAAIVNNPKADLSEMTSNYPSLLSLVREHLSNKRTEEIPYVVESLLAKVMNEFEHRLLEQQERLRTIQLGKASSFNKLEEYRLPEQQQTLRPIHQEGTLSARPDEHQLLEQQKVHIRASQQEKAPSSKPDQHQLLEQQETQLRAIQTDKVSSSKPGPLVSKATPVDEEELKTIVHQTKSGVLVMHKKYQEEYLILCKHVRSLVSAASGYQKVLEENRKLYNQVQDLKGNIRVYCRVRPFLGAPSPTNSVGAIDDGSISIITPSNYGKDGRKTFNFNKCFGPTATQSWSFHCVLRLYFYLFMYVYAYAYALLTSGPDDLTEDTMGVNYRALNDLFQIQEQRKDTIIYEIGVQMLEIYNEQVRDLLCTDGAIKKYPSFMICSNLFIYL 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc531g00005 597 SMART ch_5 42 160 IPR001715 GO:0005515
Stsc531g00005 597 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 397 578 IPR027417 -
Stsc531g00005 597 ProSiteProfiles Kinesin motor domain profile. 440 597 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc531g00005 597 Pfam Calponin homology (CH) domain 42 162 IPR001715 GO:0005515
Stsc531g00005 597 Pfam Microtubule binding 425 575 IPR031852 GO:0008017
Stsc531g00005 597 SUPERFAMILY Calponin-homology domain, CH-domain 33 169 IPR036872 -
Stsc531g00005 597 Gene3D - 32 164 IPR036872 -
Stsc531g00005 597 CDD CH_AtKIN14-like 42 159 - -
Stsc531g00005 597 PANTHER KINESIN-LIKE PROTEIN KLP-3 47 583 IPR027640 GO:0003777|GO:0007018
Stsc531g00005 597 Gene3D Kinesin motor domain 381 588 IPR036961 -
Stsc531g00005 597 SMART kinesin_4 438 593 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc531g00005 597 ProSiteProfiles Calponin homology (CH) domain profile. 40 162 IPR001715 GO:0005515
Stsc531g00005 597 Coils Coil 420 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc531g00005 Stsc-Chr531 11010 16224 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc531g00005 428 580 Calmodulin-binding Proteins AT5G65930 26.087 1.72e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc531g00005 K10406 - gmx:100799535 512.301