Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc531g00002 ATGAGTAACTGTGAATTATCATCTAGGACAAGGATGAAAGCTCCACCGGTTGCGTTGGCGACTCTGATTGGCCGCCAGCTTCGAAATGAAAAAGTTGAGAATCCTTTTGTGAAGTACGGGCAAGCTGGCTTGGCCAAGAAAGGAGAAGATTATTACTTAATTAAAACAGATTGCCAGAGGATTCCTGGGGATCCATCCACAGCGTTTTCCGTCTTCGCGATATTCGATGGGCATAATGGAATGTCAGCTGCTATTTTCACCAAGGAAAACTTGCTAAACAATGTTTTGAGTGCAATACCACAAGAAATCAGTAGGGATGCGTGGCTTCAGGCTCTTCCTCGTGCTCTTGTTGTTGGTTTTGTGAAAACTGACATAGAATTTCAGCAAAAGGGAGAAACTTCTGGAACAACTGCTACGTTTGTTCTGATTGATGGATGGACTGTCACTGTTGCATCTGTTGGGGATTCCCGTTGCATTCTAGATACTCAGGGAGGTGTAGTTTCTCTCTTGACTGTTGACCACAGACTAGAAGAGAATGAAGAAGAGAGGCAGCGTGTTACTGCCAGTGGTGGTGAAGTAGGAAGACTCAATGTGTTTGGAGGCAATGAGGTAGGGCCTCTTCGATGCTGGCCTGGTGGATTGTGCCTATCTAGATCAATAGGTGACACCGATGTCGGAGAATTCATTGTGCCGATACCACATGTTAAGCAAGTGAAGCTGTCAAATGCTGGTGGAAGGCTTATTATAGCTTCTGATGGCATTTGGGATGCTTTATCTTCTGATATGGCTGCCAAGTCATGTCGGGGTCTACCTGCAGAGCTTGCGGCAAAGCTAGTGGTTAAGGAAGCTATAAGGTCTAGAGGCCTGAAGGATGATACAACTTGCCTTGTTGTAGATATTATTCCTTCGGACCTTCCTGTATTACCACCAATCCCAAGAAAGAAACAANNNNNNNNNNAAAGAAATCTGAGAATTCTACAAACAAATCTACTAATAAGCTTTCTGCCGTTGGTGTTGTGGAGGAATTATTTGAAGAGGGCTCTGCAATGCTTGCCGAAAGGCTGGGTAAGGATTTCCCATTGA 1083 0.4423 MSNCELSSRTRMKAPPVALATLIGRQLRNEKVENPFVKYGQAGLAKKGEDYYLIKTDCQRIPGDPSTAFSVFAIFDGHNGMSAAIFTKENLLNNVLSAIPQEISRDAWLQALPRALVVGFVKTDIEFQQKGETSGTTATFVLIDGWTVTVASVGDSRCILDTQGGVVSLLTVDHRLEENEEERQRVTASGGEVGRLNVFGGNEVGPLRCWPGGLCLSRSIGDTDVGEFIVPIPHVKQVKLSNAGGRLIIASDGIWDALSSDMAAKSCRGLPAELAAKLVVKEAIRSRGLKDDTTCLVVDIIPSDLPVLPPIPRKKQXXXXRNLRILQTNLLISFLPLVLWRNYLKRALQCLPKGWVRISH 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc531g00002 360 SUPERFAMILY PP2C-like 41 300 IPR036457 -
Stsc531g00002 360 CDD PP2Cc 46 300 IPR001932 -
Stsc531g00002 360 PANTHER PROTEIN PHOSPHATASE 49 299 IPR015655 GO:0004722|GO:0006470
Stsc531g00002 360 ProSiteProfiles PPM-type phosphatase domain profile. 35 300 IPR001932 -
Stsc531g00002 360 FunFam probable protein phosphatase 2C 5 38 305 - -
Stsc531g00002 360 Pfam Protein phosphatase 2C 65 285 IPR001932 -
Stsc531g00002 360 SMART PP2C_SIG_2 54 300 IPR001932 -
Stsc531g00002 360 Gene3D - 36 304 IPR036457 -
Stsc531g00002 360 SMART PP2C_4 26 298 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc531g00002 Stsc-Chr531 5457 8325 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc531g00002 6 316 PP2C-type Phosphatase Gene Family AT1G09160 82.958 0.0 534
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc531g00002 - - gmx:100807886 557.755