Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc52g00017 ATGGCATCTGCTTCTTCTTCTTCAAGCTACTCAAATTCTCCATGTGCGGCATGCAAATTCTTGAGAAGAAAATGCTTGCCGGATTGCATTTTCGCGCCATATTTCCCGCCGGAAGAGCCTCAGAAATTCGCAAACGTTCACAAGATCTTCGGCGCAAGCAATGTGAGCAAGCTTCTCAACGAAGTCCAGCCTCATCAAAGGGAAGACGCCGTGAATTCTTTGGCATATGAAGCTGAAGCAAGGATCAAGGATCCAGTTTATGGTTGTGTTGGTGCAATTTCAGTGCTCCAAAGACAAGTTATTAGGCTTCAAAAGGAGCTTGATGCAACAAATGCTGATTTAGTGAGATATTGCAATGAAGGAATTCCTAATTCTACCAATTTAGGAAGAAGGAATAATAATAGTAATAGTAATAATAATAATTTGGGTGAAGGAGGTGGTGGTGGTTTTTATTACCCTCCTCCTTCTTCTTCTTCTGCTTGGAGCAATGAGCAATGA 498 0.4177 MASASSSSSYSNSPCAACKFLRRKCLPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDATNADLVRYCNEGIPNSTNLGRRNNNSNSNNNNLGEGGGGGFYYPPPSSSSAWSNEQ 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc52g00017 165 MobiDBLite consensus disorder prediction 125 144 - -
Stsc52g00017 165 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 12 131 - -
Stsc52g00017 165 Pfam Lateral organ boundaries (LOB) domain 14 110 IPR004883 -
Stsc52g00017 165 Coils Coil 93 120 - -
Stsc52g00017 165 ProSiteProfiles LOB domain profile. 13 114 IPR004883 -
Stsc52g00017 165 MobiDBLite consensus disorder prediction 125 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc52g00017 Stsc-Chr52 157785 159746 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc52g00017 8 131 AS2 family AT3G27650 79.365 3.41e-71 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Stsc52g00017 LOB 1.7e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc52g00017 - - gmx:100306630 228.024