LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc52g00006	ATGGATTCTAGTGATGGAGTTCACATGGTAGGGATACATGGAATTGGTGGCATAGGAAAAACAACACTTGCTCTTGCTGTTTATAACTTGATTGTTGACAATTTTCAAGATGTGTGCTTTCTCGAAAACGTGAGAGAAAATTCAAATAAATATGGGTTAGTACATCTTCAAAATATCCTTCTTTCTAAAATAATAGGGAAGGATGAAGTTCATATTGTAGGTGTTAAAGAAGGAACCTCACTGATACAACAAAGGCTTCGTCGAAAGAAAGTTCTTTTGGTTCTGGATGACGTTGATGATCGCAGGCAGCTACAGGCTGTTGCTGGAAAACTTGTTTGGTTTGGTCCTGGCAGCAGAGTTATTATTACAACACGCGACACACATTTGCTAAAATGTCATGGTGTTCAAGATACATATGAGGTCCACAATTTAAATGAGGATGACTCTTCTCAATTGCTTATTAAAAAAGCTTTTGAAAATGACAATGTTAGCCCGAGTTACATAGATGTTTTAAATCGTGCTATTACTTTTGCCTCGGGACATCCGCTGGCTTTGGAAATAATAGGCTCCAACTTGTTTGGAAAAGAAGTACAAGTTTGGGAATCTGCATTGGATCATTTCGAAAAACATATGGATAATAAAATGCATGAGATACTTCGAGTAAGTTTTGATGCTTTGGGAAAACAAGAGCAAAGTGTTTTCCTAGATATTGCCTGTTGTTTTAAAGGATATTCATTAGGGGAACTTACGGCTCTACTTCAAGCTCATTATGGGAGTTGCATGAAATATCATATTGGAGTGTTGATTGAAAAATCTCTCATAAAGATTGACAAGTGCGTTGGAAGTGTGACAATGCATGGTCTGATAGAGGACTTGGGCAAAGAAATTGATATTGAAAAATCACCAGAAATGCCTGGGAAACGTAGTAGATTATGGTTCTACAAAGATATAGTTAAGGTTTTAGAAGATAATCAAGGGAGTGGCGCCATTGAAATTATATATCTGGAATTTCCCTTATGTAAAGTTGGAGAAGTGAAATGGGATGGAAAAGCTTTTAAAGAGATGAAAAATCTGAAAACACTTATCATAAAAAATGGTTGTTTTTCCAAAAGTCCCAAATATCTTCCAAACAGTTTAAGAGTGTTGGAATGGTGGAGATATCCTTCAGAGTATTTTCCATATGATTTTCAACCAAAGGATCTCTCCATTCTCAAGTTAGTTGATACTCCTTTTATGCCATCCAATTTGAAGAGCTTATCCAAGTTGGGGAGCTTGAAAGTTTTGAAGTTGGAGTCATGTGATTCTTTGAAAGAAATACCTGATGTATCTAATCTTCAAAATTTAGAAGAACTTTGTTTCGGAAGTTGTAGCAATCTAGTTAGAATTCACCCTTCAGTTGGTTTTTTAAATAAACTTAAAACATTAGAGTCTTATGATTGCAACAAGCTGAGGGATTTTCCATCTGCTATCAAGTTGCCCTCACTGGAAGAAATCCTTCTACTGGGTTGCTCAAGCCTAAAGTATTTTCCAGAAATTCCAGAAGAGATGGAAAATGTAAAAGTGGTTAAATTGAATGGAACTAGCATAAAAGATTTGCCATGTTCATTTCGTAATCTTTCTGGGCTGAAGCGTTTGGAAATGATAAGGAACGGGATGTGCAAGATACCAAGTGTCATTGTGATGATGCCACAACTCTCTGTGTGTGTGATTAACGGAGGCAAACATTTCAATAAGATGCGAATATCACTCGGAAGGCGTAAAAGTTATCCCGATGACCTTTCTCCAAATTTGGAATATCGTTATTTCATAAGCCTCAATTTGTCAGATGACTTTTTTCCATTAGCTGTTGACTGGTTTACCGATGTAAGAGTTTTAAACTTAAGTGGCAATGATTTCACAGTCCTTCCTGAATGCATCCAACAATTTCACCGTCTATGGAGCCTCAGAGTGGATGATTGCAAGCATCTTCGGGAGATTAGAGGAATTCCACCAAAATTATCATGGTTCTCAGCATTAAACTGCGAATCACTGAGTCCGACGAGCACAAGCATGTTACTCAATCAGGAAGTGCTTGTTAGAAGTACAGACCTTGTGATGCCAGGCGTTATTCCAAGGTGGTTTGAGCAGCGCTGCAATGGAGCTTTTATTTCTTTCTGGATTCGTGGCATTGAATTCCCTTATGATGCTTTTTCTTTTGCAATTCAACTCAAAGATTATATCTCTGTCCCAATTAGCGTAAACCTCACCTTGGCATTCAATGACAACCAAGTTAGCTATCCAATGTACATTGAATTGAACCAATTTTGTATTCTAAATTTACAATATTTTCATCCCAAGCTAACTTCGGAAAAAGGATGGAACTACATGGAGGTTTGGTTTGAAACTCTTGACATTGAAGGCATGAAGGTCCCGAGTATTGAGGTTTATTTAAAAGAGATTGGAGTGCATGTATGGAAGCAAAAGATCGGTAGCAGCATGATTGAAAATATTCGATTCACTGATCCTTACAAAATGACAGAACTAATTCTAATGATGATAATGCTCTCAATGCTATTCCCCAACCATAAGAAGCACCCCTTGCTTCTGGATACATGCATTGGTTTGTGGACATTACTCTTTCTCTCACACTCTTTTTTTGAAATTTTTTTTGAAGATGAATCCTTTGATTCATGTGAAATTGCTTGA	2685	0.3706	MDSSDGVHMVGIHGIGGIGKTTLALAVYNLIVDNFQDVCFLENVRENSNKYGLVHLQNILLSKIIGKDEVHIVGVKEGTSLIQQRLRRKKVLLVLDDVDDRRQLQAVAGKLVWFGPGSRVIITTRDTHLLKCHGVQDTYEVHNLNEDDSSQLLIKKAFENDNVSPSYIDVLNRAITFASGHPLALEIIGSNLFGKEVQVWESALDHFEKHMDNKMHEILRVSFDALGKQEQSVFLDIACCFKGYSLGELTALLQAHYGSCMKYHIGVLIEKSLIKIDKCVGSVTMHGLIEDLGKEIDIEKSPEMPGKRSRLWFYKDIVKVLEDNQGSGAIEIIYLEFPLCKVGEVKWDGKAFKEMKNLKTLIIKNGCFSKSPKYLPNSLRVLEWWRYPSEYFPYDFQPKDLSILKLVDTPFMPSNLKSLSKLGSLKVLKLESCDSLKEIPDVSNLQNLEELCFGSCSNLVRIHPSVGFLNKLKTLESYDCNKLRDFPSAIKLPSLEEILLLGCSSLKYFPEIPEEMENVKVVKLNGTSIKDLPCSFRNLSGLKRLEMIRNGMCKIPSVIVMMPQLSVCVINGGKHFNKMRISLGRRKSYPDDLSPNLEYRYFISLNLSDDFFPLAVDWFTDVRVLNLSGNDFTVLPECIQQFHRLWSLRVDDCKHLREIRGIPPKLSWFSALNCESLSPTSTSMLLNQEVLVRSTDLVMPGVIPRWFEQRCNGAFISFWIRGIEFPYDAFSFAIQLKDYISVPISVNLTLAFNDNQVSYPMYIELNQFCILNLQYFHPKLTSEKGWNYMEVWFETLDIEGMKVPSIEVYLKEIGVHVWKQKIGSSMIENIRFTDPYKMTELILMMIMLSMLFPNHKKHPLLLDTCIGLWTLLFLSHSFFEIFFEDESFDSCEIA	894

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc52g00006	894	Gene3D	-	143	227	IPR042197	-
	Stsc52g00006	894	SUPERFAMILY	L domain-like	347	691	-	-
	Stsc52g00006	894	Gene3D	Ribonuclease Inhibitor	331	518	IPR032675	-
	Stsc52g00006	894	SUPERFAMILY	"Winged helix" DNA-binding domain	214	322	IPR036390	-
	Stsc52g00006	894	PRINTS	Disease resistance protein signature	178	192	-	-
	Stsc52g00006	894	PRINTS	Disease resistance protein signature	85	99	-	-
	Stsc52g00006	894	PRINTS	Disease resistance protein signature	420	436	-	-
	Stsc52g00006	894	PRINTS	Disease resistance protein signature	9	24	-	-
	Stsc52g00006	894	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	4	237	IPR027417	-
	Stsc52g00006	894	Gene3D	Ribonuclease Inhibitor	519	691	IPR032675	-
	Stsc52g00006	894	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	5	662	IPR044974	GO:0006952
	Stsc52g00006	894	Gene3D	-	1	137	IPR027417	-
	Stsc52g00006	894	Pfam	NB-ARC domain	5	213	IPR002182	GO:0043531

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc52g00006	Stsc-Chr52	27613	30866	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc52g00006	7	535	WRKY Transcription Factor Family	AT5G45050	31.851	1.35e-59	219