Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc52g00003 ATGGCTCTGCAACTACAATCTTCCTTCTCCTCCTTTTCCACTCATTCAACTTCTTTTTCTTCCTCCTCCTCCTCCTTCAACCATGCTTACAAATATGATGTGTTTATTAGTTTCAGAGGTCAAGATACTCGCTATGGTTTTACCGGCTATCTTTATGAAGCCCTTTCTAATAAAGGAATCCATGCTTTCATTGATGATGAGGAGCTTCAAAAAGGAGGCGAAATCACACCTTCACTTCTCAGCTCAATTCAAGAGTCTAGGATTGCCATCATTGTCCTTTCTCCTAACTATGCTTCTTCTTCTTTTTGCTTGGATGAGCTTGTCCATATCTTTCACTGCATCAAGGGAAACCATCGATTGGTTTTGCCGGTTTTCTCTAATGTTGATCCTTCTGATGTTCGCCATCTTAAAAAGAGTTTCGGCGAGGCGATGGCTAAGCATGAAGAGAGATTCAAGAATGACATGAACAAGGTGCTCAAATGGAAGGAGGCTCTCCATCAAGTAGCTAATTTGTCTGGCTATCATTTCAAAGATGGGGATGGATATGAACATAAGTTTATTAGAAATATTGTGGAAAACATTTCAAGAAAGCTTAGGTTTGTACCTTTGCATGTTGCTGATTACCCTGTTGGACTAGACTCTCGAGTACCAGCAGTAATTTCCCTTTTGAAAATGGATTCTAGTGATGGAGTTCACATGGTAGGGATACATGGAATTGGTGGCATAGGAAAAACAACACTTGCTCTCGCTGTTTATAACTTGATTGTTGACAATTTTCAAGATGTGTGCTTTCTCGAAAACATGAGAGAAAATTCAAATAAATATGGGTTAGTACACCTTCAAAAAATCCTTCTTTCTAAAATAATAGGGAAGGATGAAGTCCATATTGTAGGTGTTAAAGAAGGAACCTCACTGATACAACAAAGGCTTCGTCGAAAGAAGGTTCTTTTTGTTCTGGACGACGTTGATGATTACAGGCAGCTACAGGCTGTTGCTGGAAAAGTTGATTGGTTTGGTCCTGGCAGCAGAGTTATTATTATAACACGTGACACGCATTTGCTAAAATGTCATGGTGTTCGAGATACATATGAGGTAGACGATTTAAACAAGGATGACTCTTTTCAATTGCTTATTAAAAAAGCTTTTGAAAATGACAATGTTAGCCCTAGTTACACAGATGTTTTAAATCGTGCTATTGCTTATGCCTCGGGACATCCGCTGGCTTTGGAAATAATAGGCTCCAACTTGTTTGGAAAAGAAGTACAAGTTTGGGAATCTGCATTGGATCATTTTGAAAAACATCTCGAAAATAAAATGCATGAGATACTTCGAGTAAGTTTTGATGCTTTGGGAAAACAAGAGCAAAGTGTTTTCCTTATATTGCTTGTTGTTTTAAAGGATATTTATTAG 1410 0.3823 MALQLQSSFSSFSTHSTSFSSSSSSFNHAYKYDVFISFRGQDTRYGFTGYLYEALSNKGIHAFIDDEELQKGGEITPSLLSSIQESRIAIIVLSPNYASSSFCLDELVHIFHCIKGNHRLVLPVFSNVDPSDVRHLKKSFGEAMAKHEERFKNDMNKVLKWKEALHQVANLSGYHFKDGDGYEHKFIRNIVENISRKLRFVPLHVADYPVGLDSRVPAVISLLKMDSSDGVHMVGIHGIGGIGKTTLALAVYNLIVDNFQDVCFLENMRENSNKYGLVHLQKILLSKIIGKDEVHIVGVKEGTSLIQQRLRRKKVLFVLDDVDDYRQLQAVAGKVDWFGPGSRVIIITRDTHLLKCHGVRDTYEVDDLNKDDSFQLLIKKAFENDNVSPSYTDVLNRAIAYASGHPLALEIIGSNLFGKEVQVWESALDHFEKHLENKMHEILRVSFDALGKQEQSVFLILLVVLKDIY 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc52g00003 469 Pfam NB-ARC domain 218 439 IPR002182 GO:0043531
Stsc52g00003 469 ProSiteProfiles TIR domain profile. 30 198 IPR000157 GO:0007165
Stsc52g00003 469 FunFam Disease resistance protein (TIR-NBS-LRR class) 28 200 - -
Stsc52g00003 469 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 32 459 IPR044974 GO:0006952
Stsc52g00003 469 Gene3D - 367 451 IPR042197 -
Stsc52g00003 469 Pfam TIR domain 31 198 IPR000157 GO:0007165
Stsc52g00003 469 Gene3D - 28 196 IPR035897 -
Stsc52g00003 469 MobiDBLite consensus disorder prediction 1 24 - -
Stsc52g00003 469 SUPERFAMILY Toll/Interleukin receptor TIR domain 21 174 IPR035897 -
Stsc52g00003 469 SMART till_3 31 171 IPR000157 GO:0007165
Stsc52g00003 469 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 197 461 IPR027417 -
Stsc52g00003 469 Gene3D - 197 360 IPR027417 -
Stsc52g00003 469 PRINTS Disease resistance protein signature 233 248 - -
Stsc52g00003 469 PRINTS Disease resistance protein signature 309 323 - -
Stsc52g00003 469 PRINTS Disease resistance protein signature 402 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc52g00003 Stsc-Chr52 17698 19578 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc52g00003 26 414 WRKY Transcription Factor Family AT4G12020 28.101 4.53e-33 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc52g00003 - - aip:107644584 634.409