Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc52g00001 ATGGCTCTGCAACTGCAATCTTCCTTCTCCTCCTCTTCCACTCATTCAACTTATTTTTCTTTCTCCTCCTCCTTCAACCATGCTTACAAATATGATGTGTTTATTAGTTTCAGAGGTCAAGATACGCGCTATGGTTTTACCGGCTATCTTTATGAAGCTCTTTCTAATAAAGGAATCCATTCTTTCATTGATGATCAGGAGCTTCAAAAAGGGGACGAAATCACACCCTCACTTCTCAGATCAATTCAAGAGTCTAGGATTGCCATCATTGTCCTTTCTCCTAACTACGCTTCTTCTTCTTTTTGCTTAGATGAGCTTGTCCATATCCTTCACTACATCAAGGGAAATAATCGGTTAGTTTTGCCGGTTTTTTATAAGGTTGATCCTTCTGATGTTCGCCATCTAAAAAAGAGTTTTGGAGAGGCAATGGCTAAGCATGAGGAGAGATTCAAGAATGACATGAACAAGGTGCACAAATGGAAGAAGGCTCTGCATCAAATAGCTAATTTGTCTGGCTATCATTTCAAAGATGGGGATGGATATGAACATAAGTTTATTAAAAATATTGTGGAAAACATTTCAAGAAAGGTTAAGTTTGTACCTTTGCCTGTTGCTGATTACCCTGTTGGACTAGAATCTCGTGTGCCAGAAGTAATTTCCCTTTTGAAAATGGATTATAGTGATCAAGTTCACATGGTAGGGATACATGGAATTGGTGGCATAGGAAAAACAATACTTGCTCTTGCTGTTTATAATGTGATTGTTGACAGTTTTGAAGGGAAGGATGAAGTCCATATTGTAGGTGTTAAAGAAGGAACCTCACTGATACAACAAAGGCTTTCTCGAAAGAAAGTTCTTTTGGTTTTGGATGACGTTGATGATTGCAGGCAGCTACAGGCTGTTGCTGGAAAACTTGTTTGGTTTGGTCCTGGCAGCAGAGTTATTATTACAACACGTGACACACATTTGTTGAAATGTCATGGTGTTCAAGATACATATGAGGTAGATGGTTTAAACATGAATGACTCTTTTCAATTGCTTATTAAAAAAGCTTTTGAAAATGACAATGTTAGCCCAGGTTACACTGATGTTTTAAATCGTGCAATAGCTTATGCCTCGGGAAATCCACTGGCTTTGGAATTAATAGGCTCCAACTTGTTTGGAAAAGAAGTACAAGTTTGGGAATCTGCATTGGATCATTTTGAAAAACATCTCGATAAGAAAATGCGTGAGATACTTCGAGTAAGTTTTGATGCTTTGGGAAAAGAAGAGCAAAGTGTTTTCCTAGATATTGCTTGTTGTTTTAAAGGACATTCATTAGTGGAAGTTATAGATCTACTTCAAGCTCATTATGGGAGTTGCATGGAATATCATATTGGAGTGTTGGTTGAAAAATCTCTCATAAAGACTAATAAGGTGAATGGAATAGTGACAATGCACGATTTGATAGAGGACTTGGGCAAAGAAATTGTTTTTGAAACATCACCAGCAATGCCTGGGAAACGTAGTAGATTATGGTTCTATGAAGATATAATTAAGGTTTTAGAAGATAATCAAGGGAGTAGCGCCATTGAAATTATATATCTGGAATTTCCCTTGTTTAAAGGTGGAGAAGTGAAATGGGATGGAAAAGCTTTTAAGGAGATGAAAAATCTGAAAACACTTATCATAAAAAATGGTTGTTTTTCAAAAAGTCCCAAACATCTTCCAAACAGTTTAAGAGTATTGGAATGGTGGAGATATCCTTCAGAGTATTTTCCATATGATTTTCAACCAAAGGAGCTCTCTGTTCTCAAGTTACATGATAATTGCTTTATGTCATCCATGTTGAATAGCTTGTTTAAGTTGGGGAGTTTGAAAGTTTTGGAATTGGAGATCTGTGATTCTTTGAAAGAAATACCTGATGTATCTAATCTTCAAAATTTAGAAGAACTTTGGTTCAGAAGATGTAGCAATCTAATTAGAATTCACCGTTCAGTTGGCTTTTTAAATAAACTTAAAACATTAAAGACTACTTATTGCAAAAAGCTGAGGAGTTTTCCACCTGCTATCAAATTGCCCTCACTGGAACAGCTCATTCTACAAGGTTGCTCAAGCCTTAAGTATTTTCCAGAAATTCTAGAAGAGATGGAAAATGTAAAAGTGCTCGATCTGAATTATACTGGCATAAAAGATTTGCCATGTTCATTTCGTAATCTTTCTGGACTGAGGCGTTTGGAAATGATAGGGGATGAAATGTGTAAGATACCAAGTGTCATTACCATGATGCCGCAACTGTGTGAGTGTATGATTGACGGAGGAGGCAATAGCTGCCGGGAACGATCATTGCAGATGGAGATGATTCTTGAAAAGCTAATTCACTGCATCCCGTCTTCAGATTGGATAAATTGTTGTTTCCAAAACATTAATTTGTCAGATGACTTTTTTCCACTAGCTGTTGTATGGTTTCCCAATGTGTCATCTTTAAACTTAAGTGGCAATAATTTCTCTGTCCTTCCTGAATGCATCCAACAATTTCACCTTCTAAGGGAACTCATAGTGAATGATTGCGAGCATCTTCGGGAGATTAGAGGAATTCCACCAAAATTGGAACGCTTCTCAGCAATAAACTGCAAATTGTTGAGTCCGTGGGGTACAACCGTGTTACTCAATCAGGATGTGCATGAGGGTAGAAGTACCCGCTTTGTGATGCCTGGTGGAAGCATTCCAAGGTGGTTTGAGCGACGCTTCAGCGGTGCTTCTATTTCTTTATGGTTTCGCGGCACCAAATTTCCTAACAATGCTCTTTGTGTTGCAATTCTACTCAAAGATTATATCTCTGTTCCAATTGAAATAAGCCTCACCGTGGCAATCAGTGGCAACGAAGTTTGCTATGGAGAGCAGGCCAGAGTGAATCAATTATTTATTTTTAATCTGAATTTACAACGGTATCATCACATACTAACTTTGCAAAAAGGATGGAATCACGCGGAGCTTTCTTGTAAAGCACGTTACAATAACAGCATGGAGGTCTCAAGTATTGAGTTTATTGTAAAAGAGATTCGAATGCATGTATGGAAGCAGAAGATCGGTAGCAGTATTATTGAAGATATTCGATTCAGTGATCCTTACAAAATGACAGAACTAATTATAATGATGATGATGCTCTCAATGGTATTCCCCAACCATAAGAGGCAGCCCTTGCTCATGGAAACATGCATTGGTTTGTGGACATTACTCTTTCTCTCACACACCTATTTTGAATAA 3246 0.3768 MALQLQSSFSSSSTHSTYFSFSSSFNHAYKYDVFISFRGQDTRYGFTGYLYEALSNKGIHSFIDDQELQKGDEITPSLLRSIQESRIAIIVLSPNYASSSFCLDELVHILHYIKGNNRLVLPVFYKVDPSDVRHLKKSFGEAMAKHEERFKNDMNKVHKWKKALHQIANLSGYHFKDGDGYEHKFIKNIVENISRKVKFVPLPVADYPVGLESRVPEVISLLKMDYSDQVHMVGIHGIGGIGKTILALAVYNVIVDSFEGKDEVHIVGVKEGTSLIQQRLSRKKVLLVLDDVDDCRQLQAVAGKLVWFGPGSRVIITTRDTHLLKCHGVQDTYEVDGLNMNDSFQLLIKKAFENDNVSPGYTDVLNRAIAYASGNPLALELIGSNLFGKEVQVWESALDHFEKHLDKKMREILRVSFDALGKEEQSVFLDIACCFKGHSLVEVIDLLQAHYGSCMEYHIGVLVEKSLIKTNKVNGIVTMHDLIEDLGKEIVFETSPAMPGKRSRLWFYEDIIKVLEDNQGSSAIEIIYLEFPLFKGGEVKWDGKAFKEMKNLKTLIIKNGCFSKSPKHLPNSLRVLEWWRYPSEYFPYDFQPKELSVLKLHDNCFMSSMLNSLFKLGSLKVLELEICDSLKEIPDVSNLQNLEELWFRRCSNLIRIHRSVGFLNKLKTLKTTYCKKLRSFPPAIKLPSLEQLILQGCSSLKYFPEILEEMENVKVLDLNYTGIKDLPCSFRNLSGLRRLEMIGDEMCKIPSVITMMPQLCECMIDGGGNSCRERSLQMEMILEKLIHCIPSSDWINCCFQNINLSDDFFPLAVVWFPNVSSLNLSGNNFSVLPECIQQFHLLRELIVNDCEHLREIRGIPPKLERFSAINCKLLSPWGTTVLLNQDVHEGRSTRFVMPGGSIPRWFERRFSGASISLWFRGTKFPNNALCVAILLKDYISVPIEISLTVAISGNEVCYGEQARVNQLFIFNLNLQRYHHILTLQKGWNHAELSCKARYNNSMEVSSIEFIVKEIRMHVWKQKIGSSIIEDIRFSDPYKMTELIIMMMMLSMVFPNHKRQPLLMETCIGLWTLLFLSHTYFE 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc52g00001 1081 Pfam TIR domain 30 198 IPR000157 GO:0007165
Stsc52g00001 1081 Gene3D Ribonuclease Inhibitor 526 878 IPR032675 -
Stsc52g00001 1081 FunFam Disease resistance protein (TIR-NBS-LRR class) 27 199 - -
Stsc52g00001 1081 Gene3D - 337 421 IPR042197 -
Stsc52g00001 1081 SMART till_3 30 170 IPR000157 GO:0007165
Stsc52g00001 1081 Pfam NB-ARC domain 274 414 IPR002182 GO:0043531
Stsc52g00001 1081 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 431 IPR027417 -
Stsc52g00001 1081 Gene3D - 254 331 IPR027417 -
Stsc52g00001 1081 Gene3D - 25 202 IPR035897 -
Stsc52g00001 1081 PRINTS Disease resistance protein signature 372 386 - -
Stsc52g00001 1081 PRINTS Disease resistance protein signature 614 630 - -
Stsc52g00001 1081 PRINTS Disease resistance protein signature 232 247 - -
Stsc52g00001 1081 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 31 857 IPR044974 GO:0006952
Stsc52g00001 1081 SUPERFAMILY Toll/Interleukin receptor TIR domain 20 173 IPR035897 -
Stsc52g00001 1081 ProSiteProfiles TIR domain profile. 29 197 IPR000157 GO:0007165
Stsc52g00001 1081 SUPERFAMILY L domain-like 541 877 - -
Stsc52g00001 1081 SUPERFAMILY "Winged helix" DNA-binding domain 408 516 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc52g00001 Stsc-Chr52 1243 5138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc52g00001 25 741 WRKY Transcription Factor Family AT4G12020 30.570 8.66e-70 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc52g00001 - - ahf:112751484 1288.09