Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc521g00004 ATGGAGCTTCAACTAGGTTTGGGTCTCCCAATTATTCATGATGATGATCATCCCATGGAGGGTTGTGAATTGTGGAGGAGATGTAGGTTTAGTAGTAGTGATGAAAGCAAAAAGCATGTAAGAAAGAAGCGAAGCTATGAAGATTATTCGATTGGAGAATGTTCTTCGGAAAAGACTACTTTGCCTTTACTAGTATGGAGTGGACAGCCAAATGAGGAAGAAGAAGATGACGACTCTAATGGAAACATGCATAGAAGAAACATTCACTTATCAAACAAGAATGAAGGGGAGGAAAATGATTTGGTGGGGTGGCCACCAATTAAGTCATGGAGGAAGAAAGAACTGAATCATCAAAACCCTACAACAAGGGTTAGGCAAATAAGGAACAATAATACGATGCAAGCAACAAATCATCATGATGAAAATCAAAATAGCAGAGAAGAGACAGAGTCTTTGTATGTTAAGGTTAACATGGAAGGGGTAATTGTTGGAAGGAAGATTGATTTGAGGCTTTACAATTCTTACCAGACTCTTACACACACTTTAGTTACTATGTTTGCTAAATACCAAAATTTAGAGGAAGATGGAGCGAGTTATAAACTCACTTTTCAGAATGAACAAGGGGATTGGTTACTTGCTAGACATGTTCCATGGCAATCGTTCATTGCTACAGTTCGGCGTTTGGCGATATTAAGGAATGAAAAATGA 708 0.3828 MELQLGLGLPIIHDDDHPMEGCELWRRCRFSSSDESKKHVRKKRSYEDYSIGECSSEKTTLPLLVWSGQPNEEEEDDDSNGNMHRRNIHLSNKNEGEENDLVGWPPIKSWRKKELNHQNPTTRVRQIRNNNTMQATNHHDENQNSREETESLYVKVNMEGVIVGRKIDLRLYNSYQTLTHTLVTMFAKYQNLEEDGASYKLTFQNEQGDWLLARHVPWQSFIATVRRLAILRNEK 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc521g00004 235 Gene3D - 145 235 - -
Stsc521g00004 235 MobiDBLite consensus disorder prediction 78 96 - -
Stsc521g00004 235 MobiDBLite consensus disorder prediction 70 101 - -
Stsc521g00004 235 Pfam AUX/IAA family 36 233 IPR033389 -
Stsc521g00004 235 ProSiteProfiles PB1 domain profile. 151 235 IPR000270 GO:0005515
Stsc521g00004 235 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 3 234 IPR003311 GO:0005634|GO:0006355
Stsc521g00004 235 SUPERFAMILY CAD & PB1 domains 141 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc521g00004 Stsc-Chr521 30937 33023 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc521g00004 72 235 B3 DNA Binding Superfamily AT5G62000 23.429 4.44e-10 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Stsc521g00004 AUX_IAA 5.8e-34 CL0072