Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc51g00012 ATGTTTGAAAGACTTTGGGTTGGTCTGATATATAATGAAAAAAGATCTGATGATGATGGGTGTATTATTATGTGGTCAGCGACAGCATGTTACGGTGAAGACGCATCAGAGTTTCCATCGAGCAACATGTTTGGATCAGCAGGAGAAGGGATATGGGACAATGGTGCTGCATGTGGTAGGCAGTACCAGGTGAGGTGCATCAGTGCACCCTCACCTAGAACCTGCATCCCTGGCCAGTTGATCCAGATCAAGATCGTTGATCGCGCGCAATCATCGATCTCTAGACCTTCAATTCGTGGAACTTCCATGGTGCTCTCCACCATTGCATTCCAGGCCATTGCAAATGCCTCTGCTTCTTTCATCAACATTGAGTTTCAACAGGTTTAA 387 0.4599 MFERLWVGLIYNEKRSDDDGCIIMWSATACYGEDASEFPSSNMFGSAGEGIWDNGAACGRQYQVRCISAPSPRTCIPGQLIQIKIVDRAQSSISRPSIRGTSMVLSTIAFQAIANASASFINIEFQQV 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc51g00012 128 CDD DPBB_EG45-like 27 126 - -
Stsc51g00012 128 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 27 128 IPR007112 -
Stsc51g00012 128 PANTHER EG45-LIKE DOMAIN CONTAINING PROTEIN 26 127 - -
Stsc51g00012 128 SUPERFAMILY Barwin-like endoglucanases 27 128 IPR036908 -
Stsc51g00012 128 Gene3D - 10 128 IPR036908 -
Stsc51g00012 128 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
Stsc51g00012 128 Pfam Lytic transglycolase 51 124 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc51g00012 Stsc-Chr51 80135 82271 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc51g00012 23 128 Expansin Gene Family AT3G45970 28.205 9.43e-06 41.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc51g00012 - - lja:Lj1g3v1914930.1 172.555