Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc518g00001 ATGGTCGTTAGTGGAGGGAAGCCTCTGAAGCGCATGAAGAGGAGAGTCACCGCTGATTTCTACGACTTTCTCTCGTTCCCCTCGCCATCCCTCGCCGCCCAAGAGGGCTTCGCCGGCGCTCCCTTCAGATCCGCCGTCCGATCCTTCCTTACAAAGCACGCGCTTCTCCCGCCGCCTTCTGCGCTCTTCCCTCACCTGCTGACGTGGCAGATCCTCTTCCGCGTTGGCGACGTCTCTAGAGAAGGAGGAGCGGAGGCAGGTGGTGCGGCGGCGGTGTGCGTAGACATCGTGGAGGAGGATGTTGCCAGATCCAGATCTGTGTACTGCGATCAGTGCCGAGTTTTCGGTTGGAGCGGCCATCCAGTGTGCGGGAAACGTTACCATTTTATAATCAAAGCTGATGGGAGCTCCATTGGAGGGTATCATAAGCCATGTATGTGCTGTGGAGATATCCTGCACTTGTCAGAATCCAAGTGTAAGTCATGCAACCATGCGACTACCACCGATGATGTTGAAGACTGGGTGTACCACCAGTTAGAGAACACGACGCATCTCTTGCATGGTGTAGTACATGCCAATGGTTATGGGCACCTTCTTCGGGTTAATGGCAGAGAAGGTGGATCTAGATATCTTTCTGGTTGCCACATCATGGACTTCTGGGATCGCTTATGCAAGACACTTGGAGTCAGAAAAGTTAGTGTGATGGATGTTTCAAAGAAATATGGGTTAGATTACCGCCTACTCCATACAATCACGAAGGGACATCCGTGGTATGGACAAAATTATTCCCCCTCTCGTGTGCAGGGAATGATTTCATACTTCCAGTCTTTGTCAGACCATGAGCTTGTAAATATAAGGGATCTCTTTTGTTTTTTGATGGGTTTGATTCATGATGCTTGCAATACTCCATCAAAGGTTGATGATGTGGCCTGCAAGAAGCGGCGTTTTAATGCTTCTGGAGTGTTGTGTTCTTGGGAGAAGAAGGATATTGAACGAGTGGAAGAAGCCATGCTGAAGGTGCTGCGTGCAGTTTCTGGGTCCAATTGGGTGAGCTCTCGTGCTCTTAGGGGTGCTGTCTGCAAGTTGGCCTCTACAGAGCTTCTTGATTATTGCCTTGGAGGACTGGGAGGAAAAGTGGTCTATGGTGGAATGGTTGTGAATGCCAGATGCAACCCTCAAACTGGAACTTTTGAATACAGACTTGAGGCGGCAGATGGCTCTTCCTTTGGAATTATTGCAAACAACTCTTCTGGTTCAAAGTATCCATCCAAAGAGAATATACTACAGTGTTTGAGATATTTATATGAGGCTTTGCTTCACCCTCAGATGATGGTAAATTATGCCCTGGAACAGACTAGGGTTCCTGCAATGAGTTCTGCTCAGAAGCTTCTTGACTGCAAGCAGTTTGTGAAAGACTACACCCCTGGGATATCGCCAATGTCAGACCTGCAAAAAATACGGATATCATGTCAGGTTGAACTGGTGGATGAAGCTGAAGATCCTGCAGCCAAAACTCCACCGGAACTGATTGTGTTGCCTGCAAATGCCACTGTTTCTGAAGTCAAGATCGAAGCAGCAAATGCTTTCCAAGATGTATATCTGATGTTCAGAAGATTTCAAGTTGATGAGCTACTTGGCTATAGCGGTGTAGAAGATTCCACCCAGGTCAAGCACTTGTTAGGATCAGAAGAACCTGCCACGGTTTGTGTCCGTGGAAGATGCATGGCGAAGAATGGGCTGAGCAAGTTCCGAATGGAAAGAGGACTCGAGCGGTGGACCGTAGATTGTAACTGTGGGGCTAAGGATGACGACGGGGAGAGAATGCTGGCTTGTGACATATGTGGAGTGTGGCGGCATACTAGGTGTTCTAACATCCGAGACATTGATCCTGTTCCGGCACGATACGTTTGCCCAAAGTGCCAGAACTCGGACCTAAAGCCCAAGTCTAGTGGGCACTGCAAAGAGGTGACAGTGACCAACGTTAGTGCTAGTGGTAGCTGCTTTGGAAATGGCTTGCCAGTGCCTTCTGATATTCGATAG 2040 0.4892 MVVSGGKPLKRMKRRVTADFYDFLSFPSPSLAAQEGFAGAPFRSAVRSFLTKHALLPPPSALFPHLLTWQILFRVGDVSREGGAEAGGAAAVCVDIVEEDVARSRSVYCDQCRVFGWSGHPVCGKRYHFIIKADGSSIGGYHKPCMCCGDILHLSESKCKSCNHATTTDDVEDWVYHQLENTTHLLHGVVHANGYGHLLRVNGREGGSRYLSGCHIMDFWDRLCKTLGVRKVSVMDVSKKYGLDYRLLHTITKGHPWYGQNYSPSRVQGMISYFQSLSDHELVNIRDLFCFLMGLIHDACNTPSKVDDVACKKRRFNASGVLCSWEKKDIERVEEAMLKVLRAVSGSNWVSSRALRGAVCKLASTELLDYCLGGLGGKVVYGGMVVNARCNPQTGTFEYRLEAADGSSFGIIANNSSGSKYPSKENILQCLRYLYEALLHPQMMVNYALEQTRVPAMSSAQKLLDCKQFVKDYTPGISPMSDLQKIRISCQVELVDEAEDPAAKTPPELIVLPANATVSEVKIEAANAFQDVYLMFRRFQVDELLGYSGVEDSTQVKHLLGSEEPATVCVRGRCMAKNGLSKFRMERGLERWTVDCNCGAKDDDGERMLACDICGVWRHTRCSNIRDIDPVPARYVCPKCQNSDLKPKSSGHCKEVTVTNVSASGSCFGNGLPVPSDIR 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc518g00001 679 SUPERFAMILY FYVE/PHD zinc finger 584 644 IPR011011 -
Stsc518g00001 679 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 581 646 IPR013083 -
Stsc518g00001 679 Pfam PHD-finger 596 642 IPR019787 -
Stsc518g00001 679 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 262 654 - -
Stsc518g00001 679 ProSitePatterns Uncharacterized protein family UPF0054 signature. 187 197 IPR020549 -
Stsc518g00001 679 SMART PHD_3 595 641 IPR001965 -
Stsc518g00001 679 CDD PHD_MMD1_like 595 640 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc518g00001 Stsc-Chr518 297 5413 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc518g00001 92 640 PHD Transcription Factor Family AT5G22260 27.553 3.29e-64 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc518g00001 PHD 1.1e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc518g00001 K26271 - gmx:100818189 1082.01