Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc517g00002 ATGGCCTTGAGTACAGCAGCTCGACATGATGAAAATGTTCTCGATACTAAGCCTCTAGCAGTTTGTGGTCCGCCATTGCCATCTCATAATTCAAAAGAACAATTATCAAGTGGCAGGTTGGATGATCATATATTAGAGGCTATTATCAGTTTGAAGGAGCCAAGGGGTTCTGAATGGACTGCCATTACTTCATACATTGAGGAAAAATATCAGTCTCCTCCAAACCTCGGAAAGTTACTGCAAACAAGACTGAAGCACATGGTGGCAATTGGGAAAATAATCAAGGTACAAAAGAGGTACAAGATTACTCAAAGTGGGACAGGCACTGAGAAAACAAGATACGCTTCTTCCACTTTACTCCTGGAAGGGAGGCCCAAAGATTCCCCAGAAGCAGAGAAGAGTGATGATGTCAACATCCTCTCGATGTTCCAAGTTGATGCGGATATTTCGAAAGCAAAGAGCATGACAGCTCAAGAGGCAGCTGTGGCAGCCGCAAAGGCAGTTGCAGAGGCAGAGGCTGCCATTGCTGATGCAGAAGCAGCAGCCAGGGAGGCAGAGGCTGCAGAAGCTGAGGCACAGGCTGCTCATGTGTTTGCAAAAGCAGCAATGAAGGCACTAAAATGCAAAACATCTCATATCTGGATCAATAAAACACCTTCGTCGCCTTTATTCTTGGGTGCTACCAAGCAATAA 693 0.4545 MALSTAARHDENVLDTKPLAVCGPPLPSHNSKEQLSSGRLDDHILEAIISLKEPRGSEWTAITSYIEEKYQSPPNLGKLLQTRLKHMVAIGKIIKVQKRYKITQSGTGTEKTRYASSTLLLEGRPKDSPEAEKSDDVNILSMFQVDADISKAKSMTAQEAAVAAAKAVAEAEAAIADAEAAAREAEAAEAEAQAAHVFAKAAMKALKCKTSHIWINKTPSSPLFLGATKQ 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc517g00002 230 Coils Coil 161 195 - -
Stsc517g00002 230 Gene3D - 32 135 IPR036388 -
Stsc517g00002 230 PANTHER SINGLE MYB HISTONE 4 6 209 IPR044597 GO:0003691
Stsc517g00002 230 SMART h15plus2 34 99 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc517g00002 230 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 36 104 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc517g00002 230 Pfam linker histone H1 and H5 family 42 97 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc517g00002 230 SUPERFAMILY "Winged helix" DNA-binding domain 37 112 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc517g00002 Stsc-Chr517 5491 9068 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc517g00002 31 214 Single Myb Histone (SMH) Gene Family AT5G67580 47.568 2.36e-25 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc517g00002 K09422 - gmx:100779583 196.823