Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc517g00001 ATGGGTGCGCCTAAACAGAAATGGACCGCAGAAGAAGAAGCAGCACTGAAAGCTGGAGTAGTCAAACATGGAGCAGGAAAATGGCGCACTATACTTACAGACCCAGAATTTAGTGCCCTTTTGCGGATGCGCTCCAATGTAGATCTCAAGGATAAATGGAGGAACATAAATGTCACAGCAATTTGGGGATCCCGGCAGAAGGCCAAACTAGCCCTTAAAAAAAGCCTACCAGCCCCTAAAATTGACAACTATCGTATGGCCTTGAGTACAGCAGCTCGACATGATGAAAATGTTCTCGATACTAAGCCTCTAGCAGTTTGTGGTCCGCCATTGCCATCTCATAATTCAAAAGAACAATTATCAAGGTTGGATGATCATATATTAGAGGCTATTATCAGTTTGAAGGAGCCAAGGGGTTCTGAATGGACTGCCATTACTTCATACATTGAGGAAAAATATCAGTCTCCTCCAAACCTCGGAAAGTTACTGCAAACAAGACTGAAGCACATGGTGGCAATTGGGAAAATAATCAAGGTACAAAAGAGGTACAAGATTACTCAAAGTGGGACAGGCACTGAGAAAACAAGATACGCTTCTTCCACTTTACTCCTGGAAGGGAGGCCCAAAGATTCCCCAGAAGCAGAGAAGAGTGATGATGTCAACATCCTCTCGATGTTCCAAGTTGATGCGGATATTTCGAAAGCAAAGAGCATGACAGCTCAAGAGGCAGCTGTGGCAGCCGCAAAGGCAGTTGCAGAGGCAGAGGCTGCCATTGCTGATGCAGAAGCAGCAGCCAGGGAGGCAGAGGCTGCAGAAGCTGAGGCACAGGCTGCTCATGTGTTTGCAAAAGCAGCAATGAAGGCACTAAAATGCAAAACATCTCATATCTGGATCAATAAAACACCTTCGTCGCCTTTATTCTTGGGTGCTACCAAGCAATAA 942 0.4554 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILTDPEFSALLRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKKSLPAPKIDNYRMALSTAARHDENVLDTKPLAVCGPPLPSHNSKEQLSRLDDHILEAIISLKEPRGSEWTAITSYIEEKYQSPPNLGKLLQTRLKHMVAIGKIIKVQKRYKITQSGTGTEKTRYASSTLLLEGRPKDSPEAEKSDDVNILSMFQVDADISKAKSMTAQEAAVAAAKAVAEAEAAIADAEAAAREAEAAEAEAQAAHVFAKAAMKALKCKTSHIWINKTPSSPLFLGATKQ 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc517g00001 313 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 119 187 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc517g00001 313 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Stsc517g00001 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Stsc517g00001 313 CDD SANT_TRF 6 57 - -
Stsc517g00001 313 Pfam linker histone H1 and H5 family 124 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc517g00001 313 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Stsc517g00001 313 SUPERFAMILY "Winged helix" DNA-binding domain 118 194 IPR036390 -
Stsc517g00001 313 SMART sant 4 59 IPR001005 -
Stsc517g00001 313 SMART h15plus2 117 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc517g00001 313 Gene3D - 116 218 IPR036388 -
Stsc517g00001 313 PANTHER SINGLE MYB HISTONE 4 1 292 IPR044597 GO:0003691
Stsc517g00001 313 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Stsc517g00001 313 FunFam Telomere repeat-binding factor 1 2 58 - -
Stsc517g00001 313 Coils Coil 244 278 - -
Stsc517g00001 313 Gene3D - 2 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc517g00001 Stsc-Chr517 3821 9068 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc517g00001 1 297 Single Myb Histone (SMH) Gene Family AT5G67580 53.000 3.97e-74 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc517g00001 Linker_histone 2.6e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc517g00001 K09422 - gmx:100779583 356.681