LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc509g00006	ATGATGGAGTCGCTTTTTGGATATAATAATGCTGCTGCAGAAAAATCTAAACCCGGAATGAAGAAAGATAATCGCGAACAAGCCCCTCAATATATTCAGATCATTGATCCAAAGAAAGCACAAAATTTATCAATTCTGTTGAAAGCATTGAATGTGACACTAGAAGAAGTTCGCGATGCACTCCTTGAAGGAAATGAAATACCCCCAGAATTCCTACATACTTTGTTGAGGATGGCACCAAGTCAAGAGGAAGAACTAAAGCTTAGACTCTTCACAGGGGACCTACAAATGCTTGGACCTGCTGATCGATTCTTGAAAGCCATAGTCGACATTCCATTTGCCTTCAAACGAATGGAAACACTACATTACATGTGCACTCTCTCTGATGAGCTCATTGCTACTAGAGATTCCTTTGGAGTTTTGGAGGTTGCATGTAAGGAACTAAAAAGCAGCAGGCTGTTCCTGAAGCTTCTAGAAGCGGTTCTGAAAACAGGAAACCGGATGAACGATGGAACATTCCGAGGTGGTGCACAGGCCTTCAAACTCGACACGCTGCTGAAGCTATCCGATGTGAAAGGTGTAGATGGGAAAACCACACTTCTTCACTTTGTGGTCCAAGAAATAATAAGAGGAGAAGGCATAAGAGCAATGAGAATGTCAAAAGAGAGTCTAAGCTTTTCCAGCATAAAAACCGATGACCTTCTAGAAGATGTCTCCTTAGAGAACGAAGACAATTACCGGGAGCTCGGCCTCACGAACGTGTCTCGTTTGAGTAGTGAACTCGAGAATGTCAAGAAAGCAGCGGCATTAGATGTTGATGGTTTGATCAGCACAACGGCCAGACTGGGCCATGGCCTTATAAAGGCGAGAGACTTTGTCAACACAGATCTTAAGACCTTGGAGGACGATCAAGGCTTCTATGAAGTCACAAAGAGCTTTGTGGAGAGTGCAGAGGAGGGTGTTGGGACCTTGCTCCAAGAAGAGAAGAAGATCATGGCTTTGATAAAGAGCACTGGTGACTATTTTCATGGCAACTCTGGCAGGGATGAAGGCTTGAGGTTGTTTCCCATTGTGCGTGATTTCTTGGTAATGTTGGATAAGGTGTGCAAGGAGATAAAGAATGTACCAAAGAAACCACAACCATCATCGGCTCAGGCATCGACACAACCACCGGCGCAACAACCCGCGCAACAACCAACACCGGCACAAGCATCAGCACAAAAGAATAGCATTGAAAAACAAGAGAGCGGTAATGCTAGTTCTAACAAAGTGTCAACTACTCCATCGGAGATACGGCCTCCTCCTCCTATTCCGCCTAATTTTCGCAATCGGCTTCCGGTAGTTCCAGATACGTCAGATGACTTTAGTTCGGATGATGATGCTCCATAG	1389	0.4471	MMESLFGYNNAAAEKSKPGMKKDNREQAPQYIQIIDPKKAQNLSILLKALNVTLEEVRDALLEGNEIPPEFLHTLLRMAPSQEEELKLRLFTGDLQMLGPADRFLKAIVDIPFAFKRMETLHYMCTLSDELIATRDSFGVLEVACKELKSSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIRGEGIRAMRMSKESLSFSSIKTDDLLEDVSLENEDNYRELGLTNVSRLSSELENVKKAAALDVDGLISTTARLGHGLIKARDFVNTDLKTLEDDQGFYEVTKSFVESAEEGVGTLLQEEKKIMALIKSTGDYFHGNSGRDEGLRLFPIVRDFLVMLDKVCKEIKNVPKKPQPSSAQASTQPPAQQPAQQPTPAQASAQKNSIEKQESGNASSNKVSTTPSEIRPPPPIPPNFRNRLPVVPDTSDDFSSDDDAP	462

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc509g00006	462	MobiDBLite	consensus disorder prediction	429	443	-	-
	Stsc509g00006	462	PANTHER	FORMIN-RELATED	1	404	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Stsc509g00006	462	MobiDBLite	consensus disorder prediction	378	428	-	-
	Stsc509g00006	462	Pfam	Formin Homology 2 Domain	1	365	IPR015425	-
	Stsc509g00006	462	SUPERFAMILY	Formin homology 2 domain (FH2 domain)	29	380	-	-
	Stsc509g00006	462	ProSiteProfiles	Formin homology-2 (FH2) domain profile.	1	391	IPR015425	-
	Stsc509g00006	462	MobiDBLite	consensus disorder prediction	1	25	-	-
	Stsc509g00006	462	Gene3D	Formin, FH2 domain	1	409	IPR042201	-
	Stsc509g00006	462	SMART	it6_source	2	380	IPR015425	-
	Stsc509g00006	462	Coils	Coil	40	60	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc509g00006	Stsc-Chr509	27636	29595	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc509g00006	1	399	FH2 protein (formin) Gene Family	AT5G54650	63.636	1.92e-173	508

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc509g00006	-		-	ahf:112772643	711.835

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