Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc509g00006 ATGATGGAGTCGCTTTTTGGATATAATAATGCTGCTGCAGAAAAATCTAAACCCGGAATGAAGAAAGATAATCGCGAACAAGCCCCTCAATATATTCAGATCATTGATCCAAAGAAAGCACAAAATTTATCAATTCTGTTGAAAGCATTGAATGTGACACTAGAAGAAGTTCGCGATGCACTCCTTGAAGGAAATGAAATACCCCCAGAATTCCTACATACTTTGTTGAGGATGGCACCAAGTCAAGAGGAAGAACTAAAGCTTAGACTCTTCACAGGGGACCTACAAATGCTTGGACCTGCTGATCGATTCTTGAAAGCCATAGTCGACATTCCATTTGCCTTCAAACGAATGGAAACACTACATTACATGTGCACTCTCTCTGATGAGCTCATTGCTACTAGAGATTCCTTTGGAGTTTTGGAGGTTGCATGTAAGGAACTAAAAAGCAGCAGGCTGTTCCTGAAGCTTCTAGAAGCGGTTCTGAAAACAGGAAACCGGATGAACGATGGAACATTCCGAGGTGGTGCACAGGCCTTCAAACTCGACACGCTGCTGAAGCTATCCGATGTGAAAGGTGTAGATGGGAAAACCACACTTCTTCACTTTGTGGTCCAAGAAATAATAAGAGGAGAAGGCATAAGAGCAATGAGAATGTCAAAAGAGAGTCTAAGCTTTTCCAGCATAAAAACCGATGACCTTCTAGAAGATGTCTCCTTAGAGAACGAAGACAATTACCGGGAGCTCGGCCTCACGAACGTGTCTCGTTTGAGTAGTGAACTCGAGAATGTCAAGAAAGCAGCGGCATTAGATGTTGATGGTTTGATCAGCACAACGGCCAGACTGGGCCATGGCCTTATAAAGGCGAGAGACTTTGTCAACACAGATCTTAAGACCTTGGAGGACGATCAAGGCTTCTATGAAGTCACAAAGAGCTTTGTGGAGAGTGCAGAGGAGGGTGTTGGGACCTTGCTCCAAGAAGAGAAGAAGATCATGGCTTTGATAAAGAGCACTGGTGACTATTTTCATGGCAACTCTGGCAGGGATGAAGGCTTGAGGTTGTTTCCCATTGTGCGTGATTTCTTGGTAATGTTGGATAAGGTGTGCAAGGAGATAAAGAATGTACCAAAGAAACCACAACCATCATCGGCTCAGGCATCGACACAACCACCGGCGCAACAACCCGCGCAACAACCAACACCGGCACAAGCATCAGCACAAAAGAATAGCATTGAAAAACAAGAGAGCGGTAATGCTAGTTCTAACAAAGTGTCAACTACTCCATCGGAGATACGGCCTCCTCCTCCTATTCCGCCTAATTTTCGCAATCGGCTTCCGGTAGTTCCAGATACGTCAGATGACTTTAGTTCGGATGATGATGCTCCATAG 1389 0.4471 MMESLFGYNNAAAEKSKPGMKKDNREQAPQYIQIIDPKKAQNLSILLKALNVTLEEVRDALLEGNEIPPEFLHTLLRMAPSQEEELKLRLFTGDLQMLGPADRFLKAIVDIPFAFKRMETLHYMCTLSDELIATRDSFGVLEVACKELKSSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIRGEGIRAMRMSKESLSFSSIKTDDLLEDVSLENEDNYRELGLTNVSRLSSELENVKKAAALDVDGLISTTARLGHGLIKARDFVNTDLKTLEDDQGFYEVTKSFVESAEEGVGTLLQEEKKIMALIKSTGDYFHGNSGRDEGLRLFPIVRDFLVMLDKVCKEIKNVPKKPQPSSAQASTQPPAQQPAQQPTPAQASAQKNSIEKQESGNASSNKVSTTPSEIRPPPPIPPNFRNRLPVVPDTSDDFSSDDDAP 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc509g00006 462 MobiDBLite consensus disorder prediction 429 443 - -
Stsc509g00006 462 PANTHER FORMIN-RELATED 1 404 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Stsc509g00006 462 MobiDBLite consensus disorder prediction 378 428 - -
Stsc509g00006 462 Pfam Formin Homology 2 Domain 1 365 IPR015425 -
Stsc509g00006 462 SUPERFAMILY Formin homology 2 domain (FH2 domain) 29 380 - -
Stsc509g00006 462 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1 391 IPR015425 -
Stsc509g00006 462 MobiDBLite consensus disorder prediction 1 25 - -
Stsc509g00006 462 Gene3D Formin, FH2 domain 1 409 IPR042201 -
Stsc509g00006 462 SMART it6_source 2 380 IPR015425 -
Stsc509g00006 462 Coils Coil 40 60 - -
Stsc509g00006 462 MobiDBLite consensus disorder prediction 375 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc509g00006 Stsc-Chr509 27636 29595 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc509g00006 1 399 FH2 protein (formin) Gene Family AT5G54650 63.636 1.92e-173 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc509g00006 - - ahf:112772643 711.835