Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc509g00003 ATGGTGGGGACTCCTATTAATGGAAGAGCAAGGCCATCTTTTGGAGTTGTAAATGGTGGAAATGATCAACAACATGGCCCTAGTAGTGATCCCCCTAGCAATGCTGGCTCAGATTATGGTGTTATAGAGTTCACAAGAGAAGATGTTGAAGCCTTGCTAAATGAAAAGTCCAAAAGGAAAGACAGATTTAATTATAAGGAAAGATGTGAAAATATGGCAGATTATATAAAGAGGCTTAAGGTTTGCATCAGATGGTTCCAAGACCTTGAGATAAGCTACTCACTAGAGCAAGAAAAGTTGAAAAGTTCATTGGAATTATCCCAGCAAAAATGCATGGAGATAGAGTTGCTGCTAAAAATCAAGGAAGAAGAGCTGAATTCAATTATTGTGGAAATGAGAAGGAATTGCACTTCTTTGCAAGAGAAGTTAATAAAGGAAGAAACAGAAAGAGCAGCGGCAACGGAATCTCTTGCTCAAGAGAAAGAGGCTCGGATTAACTTTGAGAGGTCTCAGACTGCACTAACAGAGGACCTTGGCAGAGCCCGGCAAGAGCTCGAAAGCTCAAATCAGAAGATATCATCACTCAATGACATGTATAAGCGGTTACAAGATTACATAACAAGCTTACAGCAGTACAACGGAAAGCTTCATTCAGAGCTTTCTACGGCTGAAGAAGAACTCAAGCGTGTAGAGAAAGAGAAGGCTACTGTAGTGGAGAACCTCACAATGTTAAAGGGACAACTTGCTTTGTCTATGTCTTCTCAAGAAGAGGCCACCAAACAGAAGGATGCTTTGACCATTGAAGTCACAACACTTCGAGGAGAACTGCAACAGGTAAGAGACGACCGGGACCGCCAGTTATCTCAAGTGCAAACCTTGACTACTGAATTAGCAAAATTCAAAGATTCTTCAGAGAAGTCAGGCTCTCAACTGGGGAACTTGACTATAAAAACAAGTGAACTGGAGGCGAAATGTACCTTGCAAGATAGCAGGATTAAGGTATTACAAGAGCAGCTAGAAACTGCAGAGAAGAAACTGCAGGTTTCTGATATATCTGCAATTGAGACAAGACTAGAATTTGAAGGGCAACAAAAACTTGTAAATGAGTTACAAAGACGGCTGGCAGTTTCAGAATGTAAAGTTATAGAAGGGGAGAAGCTGCGGAAATCGTTACACAATACCATTTTGGAACTAAAAGGGAATATCCGCGTCTTCTGTAGAGTGCGTCCTTTGTTACCGGATGAAGGTTGTAGCACAGAAGGAAAGATTATATCTTATCCGACATCCATGGAAGCCGCTGGGAGAGGCATTGAACTGACACAAAGTGGCCAAAAACATTCTTTTACATTCGATAAAGTTTTCGCACCTGATGCATCACAAGAGGAAGTTTTTATTGAAATTTCACAGCTGGTGCAAAGTGCTCTTGATGGTTATAAGGTTTGCATTTTTGCCTATGGTCAGACCGGGTCGGGAAAAACATATACAATGATGGGCNNNNNNNNNNGACAACCTGAGGAAAAGGGCTTGATACCTCGTTCGCTAGAACAAATATTCCAAACAAGACAGGCTCTGCAAGCTCAAGGCTGGAAATATGAACTTCAGGTATCAATGTTGGAAATATACAATGAAACCATTCGTGATCTGTTATCTACAAACAAATCATCGGATGCAGCTCGAGTAGAAAATGGTACTCCCGGAAGTGGAAAGCAATATGCAATCAAACACGATGCGAACGGAAACACACATGTCTCTGATCTTACAGTGGTGGATGTTCAAAGTGTAAAAGAGGTTGCCTTTCTTTTAAACCAAGCTGCAAATAGCAGATCTGTGGGGAAAACACAGATGAATGAACAATCTTCAAGAAGCCATTTTGTGTTCACGCTTAGAATATACGGCGTTAACGAGAGCACTGAGCAACAAGTACAAGGGATTCTGAACCTTATTGATCTTGCCGGGAGTGAGCGTCTTTCAAAGAGTGGATCAACCGGCGACCGACTGAAAGAAACTCAAGCAATCAATAAAAGTCTGTCATCATTAAGTGATGTTATATTTGCATTGGCCAAGAAGGATGATCATATTCCATTCAGGAACTCAAAGCTTACTTATCTACTTCAGCCATGTCTAGGTGGAGACTCAAAGACATTGATGTTTGTGAACATATCTCCAGAGCATAGTTCAATGGGTGAGTCATTGTGCTCACTGCGGTTTGCTTCAAGAGTCAACGCTTGTGAAATTGGGACACCTCGCAGACACATCAATGGAAGAACCTTTGACTCACGTTTGACCTATTTCTAA 2295 0.4126 MVGTPINGRARPSFGVVNGGNDQQHGPSSDPPSNAGSDYGVIEFTREDVEALLNEKSKRKDRFNYKERCENMADYIKRLKVCIRWFQDLEISYSLEQEKLKSSLELSQQKCMEIELLLKIKEEELNSIIVEMRRNCTSLQEKLIKEETERAAATESLAQEKEARINFERSQTALTEDLGRARQELESSNQKISSLNDMYKRLQDYITSLQQYNGKLHSELSTAEEELKRVEKEKATVVENLTMLKGQLALSMSSQEEATKQKDALTIEVTTLRGELQQVRDDRDRQLSQVQTLTTELAKFKDSSEKSGSQLGNLTIKTSELEAKCTLQDSRIKVLQEQLETAEKKLQVSDISAIETRLEFEGQQKLVNELQRRLAVSECKVIEGEKLRKSLHNTILELKGNIRVFCRVRPLLPDEGCSTEGKIISYPTSMEAAGRGIELTQSGQKHSFTFDKVFAPDASQEEVFIEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGXXXXQPEEKGLIPRSLEQIFQTRQALQAQGWKYELQVSMLEIYNETIRDLLSTNKSSDAARVENGTPGSGKQYAIKHDANGNTHVSDLTVVDVQSVKEVAFLLNQAANSRSVGKTQMNEQSSRSHFVFTLRIYGVNESTEQQVQGILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKDDHIPFRNSKLTYLLQPCLGGDSKTLMFVNISPEHSSMGESLCSLRFASRVNACEIGTPRRHINGRTFDSRLTYF 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc509g00003 764 CDD KISc_C_terminal 399 745 - -
Stsc509g00003 764 Pfam Kinesin motor domain 407 741 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc509g00003 764 Coils Coil 213 247 - -
Stsc509g00003 764 Coils Coil 178 198 - -
Stsc509g00003 764 Coils Coil 325 352 - -
Stsc509g00003 764 SUPERFAMILY Tropomyosin 212 395 - -
Stsc509g00003 764 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 361 741 IPR027417 -
Stsc509g00003 764 Coils Coil 262 296 - -
Stsc509g00003 764 PRINTS Kinesin heavy chain signature 477 498 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc509g00003 764 PRINTS Kinesin heavy chain signature 693 714 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc509g00003 764 PRINTS Kinesin heavy chain signature 644 662 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc509g00003 764 PRINTS Kinesin heavy chain signature 613 630 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc509g00003 764 ProSiteProfiles Kinesin motor domain profile. 401 743 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc509g00003 764 FunFam Kinesin-like protein 347 745 - -
Stsc509g00003 764 MobiDBLite consensus disorder prediction 17 35 - -
Stsc509g00003 764 Gene3D Kinesin motor domain 343 745 IPR036961 -
Stsc509g00003 764 Coils Coil 122 164 - -
Stsc509g00003 764 PANTHER KINESIN-LIKE PROTEIN KLP-3 255 750 IPR027640 GO:0003777|GO:0007018
Stsc509g00003 764 MobiDBLite consensus disorder prediction 557 576 - -
Stsc509g00003 764 SMART kinesin_4 399 751 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc509g00003 764 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc509g00003 Stsc-Chr509 10741 15705 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc509g00003 68 755 Calmodulin-binding Proteins AT5G65930 32.035 5.78e-80 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc509g00003 K10405 - gmx:100801196 1246.88