Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc507g00008 ATGAAGAACAACACCTTCCTCACCACCCTCTTAGTCTTCAAGAACACCATTAGAGAAGAGTTGATCAGGAGTGTGCATGTGTACCAAGTGAATGATGGGAAAGTAAGGGAAGTTGAAAGAGAGTTTGTGTTCTCAGAGAGTGGCTCCTATGGTGAAATGAGGTCCACACCAATCCTCAGATTGCAGAAGAAGCTCTGTGTTGATGAAGTTTCTGAAGGGTACCAAAATGGAGTGTGGCTTTGTGTCTTTTCCTTTCATAGAGATCACAAGCCTCAATTTTCCACCATTCCAAACTTGCTTCTGCTCTCTAGAAACCCGAAGCTTCGGACAATCCCAACCTTGCTCAAAGACCTCCGTGTGATATACAAATCCGAAAAAGACAACGATGTTCTACCAGACCCCACGGCGGAAGAACGCCAAGGATTCAACAGAGATTCCCAACCATTGAGGAAAGTGGTTCCTGTCTTAATTCAGGACCTGAATTTTCTTCCTTATGAACATGACATCTCCGAGTCACCCGACAACAAGCTAGATGTTCAAGCCTTGCCAGTTGCAGATTCTGCAGAAAAGAAAAAGCGTGCATCTAGTGACCGTGTAGCAAAAATAACGTTATCAGAGTTAGTCAAGTATTTTGATATACCGATTGTAGAAGCGTCGAGAAGGCTAAATGTTGGACTCACAGTTCTGAAGCGGAAATGCAGAGAATTCGGTATTCCTCGCTGGCCTCATAGGAAGATCAAATCACTTGACAGTCTCATTCATGAAATTCAGGAAGAGGCGAACAACCAACAATCGGATGACAAGGCTGCAGCATTGGCAGCAATAGAGAAACGAAGAATGTTGGAGAGCGAAAAGGAAAACCTCGAGCGGAAGCCCTTCATGGACATACAAAGCGAGACCAAGAAGTTGAGGCAGGACATCTTCAAGAGAAGGCATAGAGCACGAGCTCAGATCAAACTTAATTCAATCGTCTCCAGAAACATCGACAACAAAACTACAACTTGA 1005 0.4418 MKNNTFLTTLLVFKNTIREELIRSVHVYQVNDGKVREVEREFVFSESGSYGEMRSTPILRLQKKLCVDEVSEGYQNGVWLCVFSFHRDHKPQFSTIPNLLLLSRNPKLRTIPTLLKDLRVIYKSEKDNDVLPDPTAEERQGFNRDSQPLRKVVPVLIQDLNFLPYEHDISESPDNKLDVQALPVADSAEKKKRASSDRVAKITLSELVKYFDIPIVEASRRLNVGLTVLKRKCREFGIPRWPHRKIKSLDSLIHEIQEEANNQQSDDKAAALAAIEKRRMLESEKENLERKPFMDIQSETKKLRQDIFKRRHRARAQIKLNSIVSRNIDNKTTT 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc507g00008 334 Coils Coil 271 291 - -
Stsc507g00008 334 Pfam RWP-RK domain 201 249 IPR003035 -
Stsc507g00008 334 ProSiteProfiles RWP-RK domain profile. 184 269 IPR003035 -
Stsc507g00008 334 PANTHER PROTEIN RKD4 183 318 IPR044607 GO:0003700
Stsc507g00008 334 Coils Coil 246 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc507g00008 Stsc-Chr507 30790 34517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc507g00008 17 325 AtRKD Transcription Factor Family AT4G35590 44.048 2.29e-78 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Stsc507g00008 RWP-RK 2.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc507g00008 - - adu:107475952 578.941