Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc503g00006 ATGGATTTTGAGAACAATAGCGAACAAGAATCACTTTATTTCTATTCTACTTCTTCTTCATCACCATCTTCTTCTTCCACGTCATCACAAAGCCAACTCTCACCGATCGTCACAATACACCAACACTCTCCACCACCTCACAAGAGGAGATCTGGGAGGAAGAAGTTCCGAGAGACGCGACACCCGGTGTATAGGGGTGTCCGGCAGAGGAACGGCAACAAGTGGGTCTGCGAAGTGAGAGAACCAATCAACAAATCCAGAATATGGCTTGGAACTTATCCTACCCCTGAAATGGCCGCTAGGGCACACGACGCGGCGGTTCTCGCACTTAGAGGCACCTCAGCCACCTTCAATTTCCCTCTCTCCGTTCACCTTCTTCCCATTGCCAAGTCAACTTCACCTCAACATGTTCGAGAAGCTGCATCCAAAGCCGCACAACAAAGTAATGATGTTACTAACCCTGCTGCTTCTTCTTTGAATATTGATCTTTGTTGTGTTGGTGTTAATGGCGGTGATGAAGGAGTAGTATCGAATTCATCATCATCGAGGGGGTTCTTTGATGAGGAGGCAATGTTTAACATGCCTGCATTGCTGGAGAGCATGGCGGAGGGTATGCTTATAACACCACCGTCCATGAAACGAGGACCATTTCATCTTCATGACGATGATGATGAATTTCAAACTGACCTCACTCTCTGGAATTTCGACTAA 711 0.4684 MDFENNSEQESLYFYSTSSSSPSSSSTSSQSQLSPIVTIHQHSPPPHKRRSGRKKFRETRHPVYRGVRQRNGNKWVCEVREPINKSRIWLGTYPTPEMAARAHDAAVLALRGTSATFNFPLSVHLLPIAKSTSPQHVREAASKAAQQSNDVTNPAASSLNIDLCCVGVNGGDEGVVSNSSSSRGFFDEEAMFNMPALLESMAEGMLITPPSMKRGPFHLHDDDDEFQTDLTLWNFD 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc503g00006 236 SUPERFAMILY DNA-binding domain 63 122 IPR016177 GO:0003677
Stsc503g00006 236 FunFam Ethylene-responsive transcription factor 2 62 121 - -
Stsc503g00006 236 Gene3D AP2/ERF domain 63 122 IPR036955 GO:0003700|GO:0006355
Stsc503g00006 236 MobiDBLite consensus disorder prediction 43 59 - -
Stsc503g00006 236 Pfam AP2 domain 62 112 IPR001471 GO:0003700|GO:0006355
Stsc503g00006 236 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 16 234 IPR045277 GO:0003700
Stsc503g00006 236 CDD AP2 64 122 IPR001471 GO:0003700|GO:0006355
Stsc503g00006 236 ProSiteProfiles AP2/ERF domain profile. 63 120 IPR001471 GO:0003700|GO:0006355
Stsc503g00006 236 MobiDBLite consensus disorder prediction 1 59 - -
Stsc503g00006 236 SMART rav1_2 63 126 IPR001471 GO:0003700|GO:0006355
Stsc503g00006 236 MobiDBLite consensus disorder prediction 1 39 - -
Stsc503g00006 236 PRINTS Ethylene responsive element binding protein signature 64 75 IPR001471 GO:0003700|GO:0006355
Stsc503g00006 236 PRINTS Ethylene responsive element binding protein signature 86 102 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc503g00006 Stsc-Chr503 31550 32260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc503g00006 14 236 AP2-EREBP Transcription Factor Family AT5G51990 47.826 1.12e-56 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc503g00006 AP2 1.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc503g00006 - - aip:107610400 318.546