Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc503g00001 ATGAGATTGGAGAAGTGCTGGTTTTGTTCCTCAACCGTATATCCTGGTCATGGAATCCACTTCGTTCGTAATGATGCCAAGATTTTTCGATTTTGTAGGTCTAAATGCCATAAGAACTTCAAAATGAAGAGGAACCCTCGTAAGGTCAAATGGACCAAGCCATATCGAAGAGTGCATGGAAAGGATATGAAACAGGATTCAACGTTTGAATTCGAGAGGAAGAGGAACAAACCTGAGAGATATGACAGAAACCTTGCTGAGAATGTGCTTAAGGCCATTCCTAAGATTGATAAAATCAGAGTTACTAGAGAGGAGAGGATGAAGGGGAACAAGGAGAAGGTGCAGAGGGAGGCAGCGAAGGAGCTGGAGCAGGGTATCAGTTTGGTGAAAGCTCCTTTCGCCCTTCGGCTGGATTCGTGGCTCACTCCACCAAAGATCAAAGTCATGGTCTCCCAGCAGAATCAACCTATGGAAGAGTGA 480 0.45 MRLEKCWFCSSTVYPGHGIHFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKPYRRVHGKDMKQDSTFEFERKRNKPERYDRNLAENVLKAIPKIDKIRVTREERMKGNKEKVQREAAKELEQGISLVKAPFALRLDSWLTPPKIKVMVSQQNQPMEE 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc503g00001 159 CDD Ribosomal_L24e_L24 1 53 IPR000988 -
Stsc503g00001 159 ProSitePatterns Ribosomal protein L24e signature. 8 25 IPR023442 -
Stsc503g00001 159 SMART 4TRASH 6 44 IPR011017 -
Stsc503g00001 159 Gene3D Ribosomal protein L24e 1 68 IPR038630 -
Stsc503g00001 159 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 56 - -
Stsc503g00001 159 Coils Coil 104 124 - -
Stsc503g00001 159 FunFam probable ribosome biogenesis protein RLP24 1 67 - -
Stsc503g00001 159 PANTHER 60S RIBOSOMAL PROTEIN L24 1 157 IPR000988 -
Stsc503g00001 159 Pfam Ribosomal protein L24e 1 65 IPR000988 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc503g00001 Stsc-Chr503 12336 13595 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc503g00001 1 159 Cytoplasmic Ribosomal Protein Gene Family AT2G44860 65.476 1.09e-72 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc503g00001 K02896 - gmx:100793564 278.485