Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc4g00051 ATGGATCGCTTTTTCATCTCCGTGCATTTTTTCTTCGTTGTCTTCTCGGCAGCTTTGATTTCTCAGAATTCAGCATTCACTGATCCTCTTGATGTCACAGCTCTCCAGGATCTATACAGAACCTTAAACACCGCACCAGTGCTGGAAAGATGGGATGGCGATGATCCCTGTCAGGAGTCTTGGACAGGAGTAGCATGCTCTGGGTCATCAGTTATACACCTCAAACTTCAAGGATTAAACCTCACTGGATATCTTGGAGGCCTTCTCCACAATCTACAGAGTTTGAAGCACCTTGATGTCAGTTCTAACAACATAGTGGGAGAAATACCATCTGGTTTACCCCCAAATGTCACACATATAAACATGGCTTGCAACTATCTGAGCCAAAATATCCCACCATTATCAACCATGAGAAAACTAAAACATCTGAATTTAAGCCACAATTTCTTATATGGACCCGTTGGCAATGTGTTTACTGGGTTAGATGACCTCAAAGAAATGGACCTTTCCTACAACAATTTCACTGGAGATTTGCCGAGTTCATTCGGCTCCCTGAAAAACCTTGGAAAATTGTATCTGGAGAACAATAGATTCACTGGATCAGTCACCTACCTGGCTGAGCTTACTCTCACCGATTTGAACATCCAGGATAATCTGTTTAGTGGGATACTTCCACCACATTTTCAGACTATACAAAACTTATGGATTGGAGGGAATAAATTCCAAGCAGTAGACGAGTCTCCTCCCTGGCCTTTTCCTTTGGACAATGTATCAGTTGAGCATAATAGTACTCGTCCACCCACAACGCGAGCAAATGCCATAGAGAACTATGCTTCTGCTAAAGCAATCAAGCACAAGAAGAAACACATGGGCCCTGGAGGAATAGCTCTTACAGTTGGTGGAGTGACATTATTTGCAGCTGGATTGGCACTCTTCATTGCGACTCGTATGAATAGACCTTCTTTGAGACAAAAGAAATTGGAAAGCATTGAAAGGTCATTCCCTTCTCATCCATTCAATCTCAAAGATATCTCTACTACTGCGGTAGATACCAGCCTGCAAATCCCACCTTTCAATTCTAAATCTCTTTTGGGGCCAAGGCGATTACCTTCCTTGAATCATAAAAAAAATGGAGAAACATCAAGGAGGAGTTTTTCCGAAAGAGAAAAGGTCACTGGGAGGACAAAAGTTTATACAGTAGCTGAGATTCAGTTGGTTACAAAAAGCTTCAGTGAAGACAACCTTCTTGGAGCGGGATCTCTTGGTTCTGTTTATAGAGCTGAATTTCCAGATGGAAAGGTACCATTCAAAGTAATTTTTCCAAGGTTCTGA 1332 0.4204 MDRFFISVHFFFVVFSAALISQNSAFTDPLDVTALQDLYRTLNTAPVLERWDGDDPCQESWTGVACSGSSVIHLKLQGLNLTGYLGGLLHNLQSLKHLDVSSNNIVGEIPSGLPPNVTHINMACNYLSQNIPPLSTMRKLKHLNLSHNFLYGPVGNVFTGLDDLKEMDLSYNNFTGDLPSSFGSLKNLGKLYLENNRFTGSVTYLAELTLTDLNIQDNLFSGILPPHFQTIQNLWIGGNKFQAVDESPPWPFPLDNVSVEHNSTRPPTTRANAIENYASAKAIKHKKKHMGPGGIALTVGGVTLFAAGLALFIATRMNRPSLRQKKLESIERSFPSHPFNLKDISTTAVDTSLQIPPFNSKSLLGPRRLPSLNHKKNGETSRRSFSEREKVTGRTKVYTVAEIQLVTKSFSEDNLLGAGSLGSVYRAEFPDGKVPFKVIFPRF 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc4g00051 443 Pfam Leucine rich repeat 138 198 IPR001611 GO:0005515
Stsc4g00051 443 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 13 435 IPR046959 -
Stsc4g00051 443 Gene3D Ribonuclease Inhibitor 29 269 IPR032675 -
Stsc4g00051 443 MobiDBLite consensus disorder prediction 366 388 - -
Stsc4g00051 443 Gene3D Phosphorylase Kinase; domain 1 371 439 - -
Stsc4g00051 443 SUPERFAMILY L domain-like 45 247 - -
Stsc4g00051 443 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 28 252 - -
Stsc4g00051 443 Pfam Leucine Rich Repeat 94 113 IPR001611 GO:0005515
Stsc4g00051 443 MobiDBLite consensus disorder prediction 372 388 - -
Stsc4g00051 443 Pfam Leucine rich repeat N-terminal domain 31 67 IPR013210 -
Stsc4g00051 443 SMART LRR_typ_2 185 212 IPR003591 -
Stsc4g00051 443 SMART LRR_typ_2 161 184 IPR003591 -
Stsc4g00051 443 SMART LRR_typ_2 92 116 IPR003591 -
Stsc4g00051 443 SMART LRR_typ_2 137 160 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc4g00051 Stsc-Chr4 380390 383647 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc4g00051 3 439 Strubbelig Receptor Gene Family AT5G06820 49.441 3.98e-115 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc4g00051 - - vum:124845744 598.201